Parental gene: | PHF5A, ENSPTRG00000014427 |
| Aliases: | None |
| Description: | PHD finger protein 5A [Source:HGNC Symbol;Acc:18000] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 22:40179287..40188544(-) |
>ENSPTRG00000014427
ATGGCTAAACATCATCCTGATTTGATCTTTTGCCGCAAGCAGGCTGGTGTTGCCATCGGAAGACTGTGTGAAAAATGTGA
TGGCAAGTGTGTGATTTGTGACTCCTATGTGCGTCCCTGCACTCTGGTGCGCATATGTGATGAGTGTAACTATGGATCTT
ACCAGGGGCGCTGTGTGATCTGTGGAGGACCTGGGGTCTCTGATGCCTATTATTGTAAGGAGTGCACCATCCAGGAGAAG
GACAGAGATGGCTGCCCAAAGATTGTCAATCTGGGGAGCTCTAAGACAGACCTCTTCTATGAACGCAAAAAATACGGCTT
CAAGAAGAGGTGA
ATGGCTAAACATCATCCTGATTTGATCTTTTGCCGCAAGCAGGCTGGTGTTGCCATCGGAAGACTGTGTGAAAAATGTGA
TGGCAAGTGTGTGATTTGTGACTCCTATGTGCGTCCCTGCACTCTGGTGCGCATATGTGATGAGTGTAACTATGGATCTT
ACCAGGGGCGCTGTGTGATCTGTGGAGGACCTGGGGTCTCTGATGCCTATTATTGTAAGGAGTGCACCATCCAGGAGAAG
GACAGAGATGGCTGCCCAAAGATTGTCAATCTGGGGAGCTCTAAGACAGACCTCTTCTATGAACGCAAAAAATACGGCTT
CAAGAAGAGGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 7 .54 RPM |
| SRP007412_cerebellum | 3 .30 RPM |
| SRP007412_heart | 3 .32 RPM |
| SRP007412_kidney | 5 .73 RPM |
| SRP007412_liver | 5 .70 RPM |
| SRP007412_testis | 4 .85 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000015687 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000001090 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000004999 | possible_ortholog | 3 retrogenes | |
| Echinops telfairi | ENSETEG00000010741 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000100410 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000001104 | ortholog_one2one | 2 retrogenes | |
| Latimeria chalumnae | ENSLACG00000012094 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000013520 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000011354 | ortholog_one2one | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000016398 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000061360 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000012705 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000002839 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000011870 | ortholog_one2one | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000001162 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000024170 | ortholog_one2one | 3 retrogenes | |
| Tarsius syrichta | ENSTSYG00000001082 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000003369 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1352 | 90.72 | 87.27 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1917 | 86.61 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2479 | 99.09 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000014427 retrocopies