RetrogeneDB ID: | retro_ptro_1352 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 19:19914025..19914312(-) | ||
Located in intron of: | ENSPTRG00000010744 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHF5A | ||
Ensembl ID: | ENSPTRG00000014427 | ||
Aliases: | None | ||
Description: | PHD finger protein 5A [Source:HGNC Symbol;Acc:18000] |
Percent Identity: | 90.72 % |
Parental protein coverage: | 87.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGR-CVICGGPGVSDA |
MAKHHPDLIFCRKQAGVAI..LCEKCDGKCVICDSYVRPCTLV.ICDECNYGSY.G..CVICGGPGVSDA | |
Retrocopy | MAKHHPDLIFCRKQAGVAIR*LCEKCDGKCVICDSYVRPCTLVCICDECNYGSYWGS<CVICGGPGVSDA |
Parental | YYCKECTIQEKDRDGCPKIVNLGSSKT |
YYCKECTIQEK.RDGC.KIV.LGSSKT | |
Retrocopy | YYCKECTIQEKNRDGCLKIVYLGSSKT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .02 RPM | 7 .54 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .30 RPM |
SRP007412_heart | 0 .00 RPM | 3 .32 RPM |
SRP007412_kidney | 0 .21 RPM | 5 .73 RPM |
SRP007412_liver | 0 .00 RPM | 5 .70 RPM |
SRP007412_testis | 0 .00 RPM | 4 .85 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2033 |
Pongo abelii | retro_pabe_1661 |