RetrogeneDB ID: | retro_sara_265 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_136972:405..703(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCNP | ||
Ensembl ID: | ENSSARG00000001433 | ||
Aliases: | None | ||
Description: | PEST proteolytic signal containing nuclear protein [Source:HGNC Symbol;Acc:30023] |
Percent Identity: | 83. % |
Parental protein coverage: | 63.46 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | TKKASAISIKLGSSKPKET-VPTLAPKTLSVAAAFNEDEDSEPEEMPPEAKMRMKNIGRDTPTSAGPNSF |
TKKASAI.IKL..SKPKE..VPTLAP.T.SVAAAFNEDEDS..EEMPPEAKM.MKNI.RDT..SAGPNSF | |
Retrocopy | TKKASAIFIKLRLSKPKEN>VPTLAPRTFSVAAAFNEDEDSQAEEMPPEAKMSMKNIERDTIISAGPNSF |
Parental | NKGKHGFSDNQKLWERNIKSHLGNVHDQDN |
NKGKH.FSDNQKL.E.NIKSH.GNVHDQDN | |
Retrocopy | NKGKHWFSDNQKL*E*NIKSHPGNVHDQDN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003777 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000009593 | 3 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000007972 | 11 retrocopies | |
Callithrix jacchus | ENSCJAG00000000508 | 6 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008873 | 5 retrocopies | |
Felis catus | ENSFCAG00000029026 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000025423 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000005518 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000005878 | 5 retrocopies | |
Macaca mulatta | ENSMMUG00000017782 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000011696 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011110 | 7 retrocopies | |
Procavia capensis | ENSPCAG00000007007 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000009886 | 2 retrocopies | |
Sorex araneus | ENSSARG00000001433 | 2 retrocopies |
retro_sara_265 , retro_sara_626,
|
Sus scrofa | ENSSSCG00000011955 | 5 retrocopies | |
Tursiops truncatus | ENSTTRG00000015008 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000012239 | 1 retrocopy |