RetrogeneDB ID: | retro_ocun_1537 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | AAGW02079587:57014..57360(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCNP | ||
Ensembl ID: | ENSOCUG00000011110 | ||
Aliases: | None | ||
Description: | PEST proteolytic signal containing nuclear protein [Source:HGNC Symbol;Acc:30023] |
Percent Identity: | 56.67 % |
Parental protein coverage: | 66.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | LPTKPTKISKFGFAIGSQTSKKASAISIKLGSSKPKETVPTLAPKTLSVAA-AFNEDEDSEPEEMPPEAK |
LPTKPT.I.....A.G.QTSK.ASA........KP.ET.P.LA...LSVA..A.NEDED.EPE..PP.AK | |
Retrocopy | LPTKPTEICRSALATGGQTSKTASATCTSW-VNKPAETAPPLAANALSVAG<ACNEDEDGEPEQRPPGAK |
Parental | MRMKNIGR-DTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN |
.RM...GR.D.P.SA...S...GKHGFS..Q.LWE..IK.H.GN..DQDN | |
Retrocopy | VRMRSTGR<DSPASAD-TSLQEGKHGFSEEQRLWEPDIKPHAGNGRDQDN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 18 .16 RPM |
SRP017611_kidney | 0 .00 RPM | 15 .51 RPM |
SRP017611_liver | 0 .00 RPM | 7 .01 RPM |