RetrogeneDB ID: | retro_ocun_1072 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:154128379..154128852(+) | ||
Located in intron of: | ENSOCUG00000005403 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCNP | ||
Ensembl ID: | ENSOCUG00000011110 | ||
Aliases: | None | ||
Description: | PEST proteolytic signal containing nuclear protein [Source:HGNC Symbol;Acc:30023] |
Percent Identity: | 79.63 % |
Parental protein coverage: | 90.45 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAADL-PTKPTKISKFGFAIGSQTSKKASAI |
G...G...EA.K.........SNGGESSSRSAEKRSAEEEAADL.P.K..K...F...I....SKKASAI | |
Retrocopy | GGREGGRREAQKAAASWS-RRSNGGESSSRSAEKRSAEEEAADL<PNKTYK--DFQVWICHR*SKKASAI |
Parental | SIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSEPEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFS |
SIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSEPEEMP.EAKMRMKNIGRDTPTSA.PNSFNKGKHGFS | |
Retrocopy | SIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSEPEEMPSEAKMRMKNIGRDTPTSARPNSFNKGKHGFS |
Parental | DNQKLWERNIKSHLGNVHDQDN |
.NQKLWERNIKSHLGNVHDQDN | |
Retrocopy | GNQKLWERNIKSHLGNVHDQDN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .17 RPM | 18 .16 RPM |
SRP017611_kidney | 0 .41 RPM | 15 .51 RPM |
SRP017611_liver | 0 .00 RPM | 7 .01 RPM |