RetrogeneDB ID:

retro_shar_361

Retrocopy
location
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL841480.1:46918..47082(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SUMO3
Ensembl ID:ENSSHAG00000002220
Aliases:None
Description:small ubiquitin-like modifier 3 [Source:HGNC Symbol;Acc:11124]


Retrocopy-Parental alignment summary:






>retro_shar_361
CTTAGTAAACTAGTAAAAGCCTATTGTGAACAACAGCATTTGTCAATGAGATAGATCAGATTCCAATTTGATGGGCAACC
AAACAATGAAACAGATGTTTCATTTATGTTGAATTGGAAATTGAGGATGAGGACACAATGGATGTATTCCAACAGCAAAC
AGGA

ORF - retro_shar_361 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 71.43 %
Parental protein coverage: 56.99 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalLNKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL-EME--DEDTIDVFQQQTG
L.KL.KAYCE.Q.LSMR.IRF.FDGQP.NETD....L.E.E..DEDT.DVFQQQTG
RetrocopyLSKLVKAYCEQQHLSMR*IRFQFDGQPNNETDVSFML<ELEIEDEDTMDVFQQQTG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Sarcophilus harrisii was not studied using RNA-Seq expression data.
Sarcophilus harrisii was not studied using ChIP-Seq data.
Sarcophilus harrisii was not studied using EST data.
Sarcophilus harrisii was not studied using FANTOM5 data.
retro_shar_361 was not experimentally validated.

Retrocopy orthology:
Sarcophilus harrisii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 75 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000173213 retrocopies
Bos taurus ENSBTAG000000301698 retrocopies
Felis catus ENSFCAG000000265504 retrocopies
Myotis lucifugus ENSMLUG000000253424 retrocopies
Myotis lucifugus ENSMLUG000000286012 retrocopies
Macaca mulatta ENSMMUG000000067603 retrocopies
Mustela putorius furoENSMPUG000000102341 retrocopy
Mustela putorius furoENSMPUG000000139549 retrocopies
Oryctolagus cuniculus ENSOCUG000000217394 retrocopies
Rattus norvegicus ENSRNOG000000036702 retrocopies
Rattus norvegicus ENSRNOG000000384891 retrocopy
Sarcophilus harrisii ENSSHAG00000002220 20 retrocopies
Sarcophilus harrisii ENSSHAG000000119681 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000105872 retrocopies
Ictidomys tridecemlineatus ENSSTOG0000002468510 retrocopies
Takifugu rubripes ENSTRUG000000148921 retrocopy



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