RetrogeneDB ID: | retro_btau_1484 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 6:21052702..21052978(-) | ||
Located in intron of: | ENSBTAG00000002428 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.106572 | ||
Ensembl ID: | ENSBTAG00000030169 | ||
Aliases: | SUMO2, SMT3B, SMT3H2, Smt3A | ||
Description: | small ubiquitin-related modifier 2 precursor [Source:RefSeq peptide;Acc:NP_777194] |
Percent Identity: | 76.6 % |
Parental protein coverage: | 98.95 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | VASERIKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET |
.A.E.....VKTENNDHINLK..GQ.GSVV.FKIKRHTPLSKLMKAYCE.QGLS.RQIR..FD..PI.ET | |
Retrocopy | MANEKPQA*VKTENNDHINLKLVGQVGSVV*FKIKRHTPLSKLMKAYCEQQGLSRRQIRSQFDAHPIKET |
Parental | DTPAQLEMEDEDTIDVFQQQTGGV |
DTPAQL..ED.DTI.VFQQQTGGV | |
Retrocopy | DTPAQL--EDADTINVFQQQTGGV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 22 .42 RPM |
ERP005899_muscle | 0 .00 RPM | 69 .05 RPM |
SRP017611_brain | 0 .05 RPM | 19 .60 RPM |
SRP017611_kidney | 0 .12 RPM | 29 .64 RPM |
SRP017611_liver | 0 .00 RPM | 8 .53 RPM |
SRP030211_testis | 0 .02 RPM | 124 .54 RPM |