RetrogeneDB ID: | retro_fcat_836 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:52519919..52520152(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000026550 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.43 % |
Parental protein coverage: | 75. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | AGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTP-AQLEMEDEDTIDVFQQQT |
.G..G.VV.FKIK...PLS.LMK.YCE..G.S.R.IR..F.GQPIN..DT..A.L.ME..D...V.QQQT | |
Retrocopy | SGRAGTVVLFKIKMFIPLSTLMKTYCEQLGFSIRKIRS*FGGQPINKADTE<AELKMENKDASGVSQQQT |
Parental | GGSRVLSAP |
G.S.....P | |
Retrocopy | GVSAKQKEP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 11 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .38 RPM |
SRP017611_liver | 0 .00 RPM | 3 .03 RPM |