RetrogeneDB ID: | retro_ocun_321 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:163660227..163660455(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000021739 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.11 % |
Parental protein coverage: | 67.86 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | HTPLSKLMKAYCERQGLSMRQIRFRFDGQPINEADTPAQLEMDDEDTIDVFQQQTGGVSSRLPGRGLFSI |
H.PLSKLMKAYCERQGLSMRQIR.RFDGQPINEADTPAQLEMDD.DTI.VFQQQTGGV.SRLPGRGLFSI | |
Retrocopy | HAPLSKLMKAYCERQGLSMRQIRCRFDGQPINEADTPAQLEMDD*DTINVFQQQTGGVTSRLPGRGLFSI |
Parental | LAFAVE |
L.FAVE | |
Retrocopy | LPFAVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .27 RPM | 20 .53 RPM |
SRP017611_kidney | 0 .20 RPM | 15 .61 RPM |
SRP017611_liver | 0 .46 RPM | 6 .09 RPM |