RetrogeneDB ID: | retro_ocun_1024 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 19:39248576..39248808(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000021739 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70. % |
Parental protein coverage: | 69.64 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | IKRHTPLSKLMKAYC-ERQGLSMRQIRFRFDGQPINEADTPAQLEMDDEDTIDVFQQQT-GGVSSRLPGR |
IKR.TPLSKLMKAY..E.QGLSMRQIRFRFDG.PIN.A.TPAQL...D.DT.D.FQQQT.GGV.S.L.GR | |
Retrocopy | IKRYTPLSKLMKAYR<EWQGLSMRQIRFRFDG*PINKAYTPAQLALEDRDTLDLFQQQT<GGVASCLLGR |
Parental | GLFSILAFAV |
GL.....F.. | |
Retrocopy | GLKGDTLFSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 20 .53 RPM |
SRP017611_kidney | 0 .00 RPM | 15 .61 RPM |
SRP017611_liver | 0 .00 RPM | 6 .09 RPM |