RetrogeneDB ID: | retro_rnor_418 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:6778847..6779089(+) | ||
Located in intron of: | ENSRNOG00000014290 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSRNOG00000003670 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 57.47 % |
Parental protein coverage: | 91.49 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | VKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDG-QPINETDTPAQLEM |
.KT.N....N.K.AG..GSVV.......T..S...KAYCE.Q.LS..QIRF.FD..QPI.ETD.P.QLE. | |
Retrocopy | IKTSNKSPANVK-AGTGGSVVH*GV---THPSEPVKAYCE*QSLSAKQIRF*FDS<QPISETDMPVQLEA |
Parental | EDEDTIDVFQQQTGGVY |
E.E...DVFQQQTGGVY | |
Retrocopy | ECEE-MDVFQQQTGGVY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 28 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .70 RPM |
SRP017611_liver | 0 .00 RPM | 6 .66 RPM |