Parental gene:

ENSOCUG00000021739

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL019021:437..8821(+)


>ENSOCUG00000021739
AGAGGTGAGCAGCCCCCTTCACAGGAGGGCGTGAAGACCGAGAATGACCACATCAACCTGAAGGTGGCCGGGCAGGACGG
CTCCGTGGTGCAGTTCAAGATCAAGAGGCACACCCCACTGAGCAAGCTGATGAAGGCCTACTGCGAGCGGCAGGGCTTGT
CAATGAGGCAGATTAGATTCAGGTTCGATGGGCAACCAATTAACGAAGCGGACACACCTGCGCAGCTGGAGATGGATGAC
GAGGACACCATCGACGTGTTCCAGCAGCAGACGGGCGGCGTGAGCAGCCGCTTGCCGGGGCGTGGCCTGTTTTCCATCCT
TGCGTTTGCTGTTGAATAG

Library Parental gene expression (RPM)
SRP017611_liver 6 .09 RPM
SRP017611_kidney 15 .61 RPM
SRP017611_brain 20 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002071 ortholog_one2one 3 retrogenes
retro_amel_1388, retro_amel_1586, retro_amel_1863,
Bos taurus ENSBTAG00000017321 possible_ortholog 3 retrogenes
retro_btau_1730, retro_btau_580, retro_btau_701,
Bos taurus ENSBTAG00000030169 possible_ortholog 8 retrogenes
retro_btau_1047, retro_btau_1484, retro_btau_1804, retro_btau_260, retro_btau_344, retro_btau_489, retro_btau_582, retro_btau_895,
Choloepus hoffmanni ENSCHOG00000010239 possible_ortholog 1 retrogene
retro_chof_2468,
Callithrix jacchus ENSCJAG00000010529 ortholog_one2one 20 retrogenes
retro_cjac_1110, retro_cjac_1128, retro_cjac_1525, retro_cjac_1752, retro_cjac_1938, retro_cjac_1957, retro_cjac_1993, retro_cjac_2460, retro_cjac_2481, retro_cjac_2616, retro_cjac_2651, retro_cjac_2886, retro_cjac_2899, retro_cjac_2985, retro_cjac_3088, retro_cjac_3137, retro_cjac_4123, retro_cjac_711, retro_cjac_771, retro_cjac_774,
Cavia porcellus ENSCPOG00000025203 possible_ortholog 3 retrogenes
retro_cpor_328, retro_cpor_645, retro_cpor_963,
Felis catus ENSFCAG00000026550 ortholog_one2one 4 retrogenes
retro_fcat_1210, retro_fcat_1947, retro_fcat_823, retro_fcat_836,
Homo sapiens ENSG00000184900 possible_ortholog 4 retrogenes
retro_hsap_1675, retro_hsap_1841, retro_hsap_3672, retro_hsap_4103,
Microcebus murinus ENSMICG00000011011 ortholog_one2one 2 retrogenes
retro_mmur_179, retro_mmur_41,
Myotis lucifugus ENSMLUG00000025342 possible_ortholog 4 retrogenes
retro_mluc_1502, retro_mluc_272, retro_mluc_340, retro_mluc_625,
Myotis lucifugus ENSMLUG00000028601 ortholog_one2one 2 retrogenes
retro_mluc_1321, retro_mluc_2494,
Macaca mulatta ENSMMUG00000006760 possible_ortholog 3 retrogenes
retro_mmul_2131, retro_mmul_2215, retro_mmul_47,
Mustela putorius furo ENSMPUG00000010234 ortholog_one2one 1 retrogene
retro_mputfur_1504,
Mustela putorius furo ENSMPUG00000013954 possible_ortholog 9 retrogenes
retro_mputfur_1086, retro_mputfur_1403, retro_mputfur_1535, retro_mputfur_273, retro_mputfur_275, retro_mputfur_385, retro_mputfur_666, retro_mputfur_948, retro_mputfur_995,
Mus musculus ENSMUSG00000020265 possible_ortholog 1 retrogene
retro_mmus_3548,
Nomascus leucogenys ENSNLEG00000002351 possible_ortholog 9 retrogenes
retro_nleu_1084, retro_nleu_1253, retro_nleu_1736, retro_nleu_2052, retro_nleu_21, retro_nleu_2128, retro_nleu_3039, retro_nleu_523, retro_nleu_572,
Oryctolagus cuniculus ENSOCUG00000028195 within_species_paralog 5 retrogenes
retro_ocun_110, retro_ocun_136, retro_ocun_175, retro_ocun_22, retro_ocun_46,
Otolemur garnettii ENSOGAG00000004715 possible_ortholog 10 retrogenes
retro_ogar_1199, retro_ogar_1646, retro_ogar_1945, retro_ogar_2958, retro_ogar_328, retro_ogar_3469, retro_ogar_371, retro_ogar_419, retro_ogar_526, retro_ogar_967,
Rattus norvegicus ENSRNOG00000003670 possible_ortholog 2 retrogenes
retro_rnor_418, retro_rnor_67,
Rattus norvegicus ENSRNOG00000038489 possible_ortholog 1 retrogene
retro_rnor_2158,
Sarcophilus harrisii ENSSHAG00000002220 possible_ortholog 20 retrogenes
retro_shar_152, retro_shar_201, retro_shar_232, retro_shar_259, retro_shar_308, retro_shar_319, retro_shar_361, retro_shar_374, retro_shar_398, retro_shar_461, retro_shar_477, retro_shar_487, retro_shar_505, retro_shar_545, retro_shar_546, retro_shar_575, retro_shar_673, retro_shar_680, retro_shar_789, retro_shar_810,
Sus scrofa ENSSSCG00000024026 ortholog_one2one 2 retrogenes
retro_sscr_1089, retro_sscr_320,
Ictidomys tridecemlineatus ENSSTOG00000010587 ortholog_one2one 2 retrogenes
retro_itri_116, retro_itri_1259,
Ictidomys tridecemlineatus ENSSTOG00000024685 possible_ortholog 10 retrogenes
retro_itri_1017, retro_itri_1123, retro_itri_1355, retro_itri_202, retro_itri_264, retro_itri_272, retro_itri_79, retro_itri_921, retro_itri_981, retro_itri_983,
Takifugu rubripes ENSTRUG00000014892 possible_ortholog 1 retrogene
retro_trub_25,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_321 92.11 67.86
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2. retro_ocun_1024 70.00 69.64
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3. retro_ocun_1631 91.51 93.75
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4. retro_ocun_1690 92.45 94.64
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Download FASTA sequences of all ENSOCUG00000021739 retrocopies