Parental gene:

CBX3, ENSCHOG00000013843

Aliases:None
Description:chromobox homolog 3 [Source:HGNC Symbol;Acc:1553]
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_8000:13793..22550(+)


>ENSCHOG00000013843
ATGGCCTCCAATAAAACTACATTGCAAAAAATGGGAAAGAAGCAGAATGGAAAGAGTAAAAAAGTTGAAGAGGCAGAGCC
TGAAGAATTTGTGGTGGAAAAAGTACTGGATCGACGTGTAGTGAATGGGAAGGTGGAGTATTTCCTGAAGTGGAAGGGAT
TTACAGATGCTGACAATACTTGGGAGCCTGAAGAAAATTTAGATTGCCCAGAGTTAATTGAAGCATTCCTTAATTCTCAA
AAAGCTGGTAAAGAGAAAGATGGTACCAAAAGAAAATCTTTATCTGACAGTGAGTCTGATGACAGCAAATCAAAGAAGAA
AAGAGATGCTGCTGACAAACCAAGAGGCTTTGCTAGAGGTCTTGATCCTGAACGCATAATTGGTGCCACGGACAGCAGTG
GAGAATTAATGTTTCTCATGAAATGGAAAGATTCAGATGAGGCAGACTTGGTGCTGGCAAAAGAGGCAAACATGAAGTGT
CCTCAAATTGTAATTGCTTTTTATGAAGAGAGACTAACTTGGCATTCTTGTCCAGAAGATGAAGCTCAATAA

Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000011957 within_species_paralog 2 retrogenes
retro_chof_1860, retro_chof_2185,
Cavia porcellus ENSCPOG00000015168 ortholog_one2one 1 retrogene
retro_cpor_66,
Felis catus ENSFCAG00000015224 possible_ortholog 6 retrogenes
retro_fcat_1005, retro_fcat_1103, retro_fcat_1485, retro_fcat_1519, retro_fcat_336, retro_fcat_473,
Homo sapiens ENSG00000122565 ortholog_one2one 9 retrogenes
retro_hsap_1071, retro_hsap_1145, retro_hsap_1902, retro_hsap_2332, retro_hsap_2771, retro_hsap_3368, retro_hsap_3650, retro_hsap_766, retro_hsap_910,
Nomascus leucogenys ENSNLEG00000014931 ortholog_one2one 9 retrogenes
retro_nleu_141, retro_nleu_1685, retro_nleu_2462, retro_nleu_373, retro_nleu_397, retro_nleu_511, retro_nleu_676, retro_nleu_944, retro_nleu_964,
Ochotona princeps ENSOPRG00000011713 ortholog_one2one 9 retrogenes
retro_opri_103, retro_opri_159, retro_opri_209, retro_opri_300, retro_opri_429, retro_opri_569, retro_opri_598, retro_opri_728, retro_opri_733,
Sorex araneus ENSSARG00000008011 ortholog_one2one 2 retrogenes
retro_sara_496, retro_sara_709,
Sarcophilus harrisii ENSSHAG00000017913 ortholog_one2one 1 retrogene
retro_shar_153,
Sus scrofa ENSSSCG00000016711 ortholog_one2one 4 retrogenes
retro_sscr_1031, retro_sscr_204, retro_sscr_420, retro_sscr_755,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_chof_87 93.53 75.41
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2. retro_chof_132 97.81 100.00
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3. retro_chof_222 93.33 73.22
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4. retro_chof_411 94.67 81.97
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5. retro_chof_676 83.64 88.52
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6. retro_chof_936 87.10 100.00
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7. retro_chof_1128 88.59 100.00
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8. retro_chof_1147 93.83 88.52
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9. retro_chof_1156 90.62 85.79
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10. retro_chof_1178 83.64 87.98
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11. retro_chof_1210 94.83 63.39
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12. retro_chof_1223 84.62 90.71
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13. retro_chof_1569 90.71 100.00
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14. retro_chof_1672 90.00 100.00
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15. retro_chof_1779 98.18 90.16
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16. retro_chof_1863 86.54 56.28
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17. retro_chof_1962 90.76 100.00
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18. retro_chof_2269 75.27 96.17
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19. retro_chof_2347 99.45 100.00
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20. retro_chof_2379 77.06 59.02
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21. retro_chof_2435 85.87 100.00
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22. retro_chof_2695 83.23 90.71
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Download FASTA sequences of all ENSCHOG00000013843 retrocopies