Parental gene:

CBX3, ENSCPOG00000015168

Aliases:None
Description:chromobox homolog 3 [Source:HGNC Symbol;Acc:1553]
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_44:3079286..3086094(+)


>ENSCPOG00000015168
ATGGCGTCCAATAAAACTACATTGTTACATAACATGGAAGATACAGAAAACGAATGCTCTTTGAAAGTTGAGGAAGCAGA
GCCTGAAGAATTTGTGGTAGAAAAAGTACTGGACCGCCGTGTAGTGAATGGGAAGGTGGAATATTTTCTGAAGTGGAAGG
GATTTACAGATGAACACAGTGCTGACAATACATGGGAACCTGAAGAAAATTTAGATTGTCCAGAGTTAATTGAAGCATTT
CTTAATTCTCAAAAAGCTGGTAAAGAAAAAGATGGTACAAAACGAAAATCTTTATCTGACAGTGAATCTGATGATAGCAA
ATCAAAGAAAAAAAGAGATGCTGCTGACAAACCTAGAGGCTTTGCTAGAGGTCTTGATCCTGAACGAATAATTGGTGCCA
CAGACAGTAGTGGGGAATTGATGTTTCTCATGAAATGGAAAGATTCAGATGAGGCTGACTTGGTGCTGGCAAAAGAGGCA
AATATGAAATGTCCTCAAATTGTAATCGCTTTTTATGAAGAGAGACTAACCTGGCATTCTTGTCCAGAAGATGAAGCTCA
ATAA

Library Parental gene expression (RPM)
SRP017611_liver 3 .96 RPM
SRP017611_kidney 8 .90 RPM
SRP017611_brain 13 .57 RPM
SRP040447_lung 14 .68 RPM
SRP040447_skeletal_muscle 6 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013843 ortholog_one2one 22 retrogenes
retro_chof_1128, retro_chof_1147, retro_chof_1156, retro_chof_1178, retro_chof_1210, retro_chof_1223, retro_chof_132, retro_chof_1569, retro_chof_1672, retro_chof_1779, retro_chof_1863, retro_chof_1962, retro_chof_222, retro_chof_2269, retro_chof_2347, retro_chof_2379, retro_chof_2435, retro_chof_2695, retro_chof_411, retro_chof_676, retro_chof_87, retro_chof_936,
Felis catus ENSFCAG00000015224 possible_ortholog 6 retrogenes
retro_fcat_1005, retro_fcat_1103, retro_fcat_1485, retro_fcat_1519, retro_fcat_336, retro_fcat_473,
Homo sapiens ENSG00000122565 ortholog_one2one 9 retrogenes
retro_hsap_1071, retro_hsap_1145, retro_hsap_1902, retro_hsap_2332, retro_hsap_2771, retro_hsap_3368, retro_hsap_3650, retro_hsap_766, retro_hsap_910,
Nomascus leucogenys ENSNLEG00000014931 ortholog_one2one 9 retrogenes
retro_nleu_141, retro_nleu_1685, retro_nleu_2462, retro_nleu_373, retro_nleu_397, retro_nleu_511, retro_nleu_676, retro_nleu_944, retro_nleu_964,
Ochotona princeps ENSOPRG00000011713 ortholog_one2many 9 retrogenes
retro_opri_103, retro_opri_159, retro_opri_209, retro_opri_300, retro_opri_429, retro_opri_569, retro_opri_598, retro_opri_728, retro_opri_733,
Sorex araneus ENSSARG00000008011 ortholog_one2one 2 retrogenes
retro_sara_496, retro_sara_709,
Sarcophilus harrisii ENSSHAG00000017913 ortholog_one2many 1 retrogene
retro_shar_153,
Sus scrofa ENSSSCG00000016711 ortholog_one2many 4 retrogenes
retro_sscr_1031, retro_sscr_204, retro_sscr_420, retro_sscr_755,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_66 93.05 100.00
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Download FASTA sequences of all ENSCPOG00000015168 retrocopies