RetrogeneDB ID: | retro_chof_2435 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_7480:1742..2290(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX3 | ||
Ensembl ID: | ENSCHOG00000013843 | ||
Aliases: | None | ||
Description: | chromobox homolog 3 [Source:HGNC Symbol;Acc:1553] |
Percent Identity: | 85.87 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MASNKTTLQKMG-KKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDC |
MASNKTTL.K.G.KKQNG..KKVEEA.PEE.VVEK.LDRRVVN.KVEYFLKWKGFTD..N..EPEENLDC | |
Retrocopy | MASNKTTLRKRG<KKQNG*NKKVEEAVPEELVVEKALDRRVVNEKVEYFLKWKGFTDTNNS*EPEENLDC |
Parental | PELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFL |
PEL.EAFLNS.KAGKEKD.TKRK.LSDSESDDSKSKK.R.AADK.RGFARGLD.E.IIGATDSSGELMF. | |
Retrocopy | PELMEAFLNSPKAGKEKDATKRKALSDSESDDSKSKKIREAADKARGFARGLDLECIIGATDSSGELMFF |
Parental | MKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ |
MK.KDSDEADLVLAKEANMKCPQIVI.F.EERLTWHSCPEDEAQ | |
Retrocopy | MKRKDSDEADLVLAKEANMKCPQIVIVFNEERLTWHSCPEDEAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011957 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000013843 | 22 retrocopies |
retro_chof_1128, retro_chof_1147, retro_chof_1156, retro_chof_1178, retro_chof_1210, retro_chof_1223, retro_chof_132, retro_chof_1569, retro_chof_1672, retro_chof_1779, retro_chof_1863, retro_chof_1962, retro_chof_222, retro_chof_2269, retro_chof_2347, retro_chof_2379, retro_chof_2435 , retro_chof_2695, retro_chof_411, retro_chof_676, retro_chof_87, retro_chof_936,
|
Cavia porcellus | ENSCPOG00000015168 | 1 retrocopy | |
Felis catus | ENSFCAG00000015224 | 6 retrocopies | |
Homo sapiens | ENSG00000122565 | 9 retrocopies | |
Nomascus leucogenys | ENSNLEG00000014931 | 9 retrocopies | |
Ochotona princeps | ENSOPRG00000011713 | 9 retrocopies | |
Sorex araneus | ENSSARG00000008011 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017913 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016711 | 4 retrocopies |