RetrogeneDB ID: | retro_hsap_1902 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 18:2652807..2653252(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000266405 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX3 | ||
Ensembl ID: | ENSG00000122565 | ||
Aliases: | CBX3, HECH, HP1-GAMMA, HP1Hs-gamma | ||
Description: | chromobox homolog 3 [Source:HGNC Symbol;Acc:1553] |
Percent Identity: | 68.18 % |
Parental protein coverage: | 82.51 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | QKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLN |
.K..K...GK..K..EAEPE.FVVEKVL...VVNGKVEY.LK.KGFT.ADN..EPEENLD.PE.IE.FLN | |
Retrocopy | KKWDKRLSGKGIKADEAEPEDFVVEKVLHQGVVNGKVEYSLKRKGFTLADNN*EPEENLDFPEFIELFLN |
Parental | SQK-AGKEKDGTKRKSLSDSESDDSKSKK-KRDAADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSD |
.QK..GK.KD.TKRKSL..SES..S...K..RDAA.KP..FAR.LDP...IGATD.S.ELMFLM..KDSD | |
Retrocopy | PQK>TGKGKDSTKRKSL--SESE-SDDSK>ERDAAEKPGDFARTLDPKQRIGATDCSEELMFLMECKDSD |
Parental | EADLVLAK-EANMK |
EADLVLAK.EAN.K | |
Retrocopy | EADLVLAK<EANAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .85 RPM | 80 .86 RPM |
bodymap2_adrenal | 1 .56 RPM | 120 .32 RPM |
bodymap2_brain | 0 .91 RPM | 96 .53 RPM |
bodymap2_breast | 0 .31 RPM | 90 .72 RPM |
bodymap2_colon | 0 .08 RPM | 114 .62 RPM |
bodymap2_heart | 0 .20 RPM | 57 .25 RPM |
bodymap2_kidney | 0 .25 RPM | 134 .05 RPM |
bodymap2_liver | 0 .11 RPM | 48 .92 RPM |
bodymap2_lung | 0 .40 RPM | 102 .48 RPM |
bodymap2_lymph_node | 0 .00 RPM | 120 .81 RPM |
bodymap2_ovary | 0 .94 RPM | 121 .93 RPM |
bodymap2_prostate | 0 .29 RPM | 106 .43 RPM |
bodymap2_skeletal_muscle | 0 .25 RPM | 50 .11 RPM |
bodymap2_testis | 1 .06 RPM | 233 .46 RPM |
bodymap2_thyroid | 1 .02 RPM | 103 .27 RPM |
bodymap2_white_blood_cells | 0 .32 RPM | 138 .39 RPM |
Species | RetrogeneDB ID |
---|---|
Callithrix jacchus | retro_cjac_1100 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .62 RPM |
CEU_NA11843 | 0 .71 RPM |
CEU_NA11930 | 0 .62 RPM |
CEU_NA12004 | 0 .53 RPM |
CEU_NA12400 | 0 .49 RPM |
CEU_NA12751 | 0 .44 RPM |
CEU_NA12760 | 0 .36 RPM |
CEU_NA12827 | 0 .57 RPM |
CEU_NA12872 | 0 .33 RPM |
CEU_NA12873 | 0 .51 RPM |
FIN_HG00183 | 0 .71 RPM |
FIN_HG00277 | 0 .92 RPM |
FIN_HG00315 | 0 .63 RPM |
FIN_HG00321 | 0 .79 RPM |
FIN_HG00328 | 0 .36 RPM |
FIN_HG00338 | 0 .68 RPM |
FIN_HG00349 | 0 .46 RPM |
FIN_HG00375 | 0 .56 RPM |
FIN_HG00377 | 0 .48 RPM |
FIN_HG00378 | 0 .36 RPM |
GBR_HG00099 | 0 .87 RPM |
GBR_HG00111 | 0 .49 RPM |
GBR_HG00114 | 1 .00 RPM |
GBR_HG00119 | 0 .96 RPM |
GBR_HG00131 | 1 .01 RPM |
GBR_HG00133 | 0 .72 RPM |
GBR_HG00134 | 0 .76 RPM |
GBR_HG00137 | 1 .21 RPM |
GBR_HG00142 | 0 .92 RPM |
GBR_HG00143 | 0 .19 RPM |
TSI_NA20512 | 0 .45 RPM |
TSI_NA20513 | 0 .77 RPM |
TSI_NA20518 | 0 .69 RPM |
TSI_NA20532 | 0 .44 RPM |
TSI_NA20538 | 0 .83 RPM |
TSI_NA20756 | 0 .61 RPM |
TSI_NA20765 | 0 .58 RPM |
TSI_NA20771 | 0 .91 RPM |
TSI_NA20786 | 0 .44 RPM |
TSI_NA20798 | 1 .09 RPM |
YRI_NA18870 | 0 .61 RPM |
YRI_NA18907 | 0 .49 RPM |
YRI_NA18916 | 0 .59 RPM |
YRI_NA19093 | 0 .31 RPM |
YRI_NA19099 | 0 .59 RPM |
YRI_NA19114 | 0 .47 RPM |
YRI_NA19118 | 0 .68 RPM |
YRI_NA19213 | 0 .60 RPM |
YRI_NA19214 | 0 .54 RPM |
YRI_NA19223 | 0 .44 RPM |