RetrogeneDB ID: | retro_chof_2269 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_62341:2682..3209(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX3 | ||
Ensembl ID: | ENSCHOG00000013843 | ||
Aliases: | None | ||
Description: | chromobox homolog 3 [Source:HGNC Symbol;Acc:1553] |
Percent Identity: | 75.27 % |
Parental protein coverage: | 96.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 6 |
Parental | LQKMGKKQNGK-SKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDC-PELIEA |
.QK.GKKQNGK..KKVEEAEPEEFV.EKVL.R.VVNGKVEYFLK.K.FTDADNTWEPE.NLD..PELIEA | |
Retrocopy | MQKIGKKQNGK<EKKVEEAEPEEFVMEKVLNRHVVNGKVEYFLK*KEFTDADNTWEPEGNLDS<PELIEA |
Parental | FLNSQKAGKEKDGTKRKSLSDSESDDSKSKK-KRDAADKPRGFARGLDPERIIGATDSSGELMF-LMKWK |
.LNS.............SLSDSESD.SKSKK.KRDA.DKPRGFARGLDPE..IG.TDSSGELMF.LMKWK | |
Retrocopy | LLNSXXXXXXXXXXXXXSLSDSESDVSKSKK>KRDASDKPRGFARGLDPEHTIGVTDSSGELMF>LMKWK |
Parental | DSDEADLVLAKEANMKCPQIVIAFYEE-RLTWHSCPE-DEAQ |
DSDEADLVLAK.ANM..PQ.......E.RLTWHSCPE.DEAQ | |
Retrocopy | DSDEADLVLAKGANMNSPQ-IVTSFYE>RLTWHSCPE>DEAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011957 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000013843 | 22 retrocopies |
retro_chof_1128, retro_chof_1147, retro_chof_1156, retro_chof_1178, retro_chof_1210, retro_chof_1223, retro_chof_132, retro_chof_1569, retro_chof_1672, retro_chof_1779, retro_chof_1863, retro_chof_1962, retro_chof_222, retro_chof_2269 , retro_chof_2347, retro_chof_2379, retro_chof_2435, retro_chof_2695, retro_chof_411, retro_chof_676, retro_chof_87, retro_chof_936,
|
Cavia porcellus | ENSCPOG00000015168 | 1 retrocopy | |
Felis catus | ENSFCAG00000015224 | 6 retrocopies | |
Homo sapiens | ENSG00000122565 | 9 retrocopies | |
Nomascus leucogenys | ENSNLEG00000014931 | 9 retrocopies | |
Ochotona princeps | ENSOPRG00000011713 | 9 retrocopies | |
Sorex araneus | ENSSARG00000008011 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017913 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016711 | 4 retrocopies |