Parental gene:

ENSCJAG00000003311

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:6:67628561..67663960(+)


>ENSCJAG00000003311
ATGGGAATTCTCTTCACCAGAATATGGAGACTGTTCAATCACCAGGAGCACAAAGTTATCATTGTTGGGCTGGATAATGC
AGGAAAAACTACCATCCTTTACCAGTTTTCTATGAATGAAGTTGTACACACATCTCCTACAATAGGAAGTAACGTAGAAG
AGATAGTGATTAATAATACACGTTTCCTAATGTGGGATATTGGTGGCCAAGAATCTCTTCGTTCTTCCTGGAACACTTAT
TATACTAACACAGAGTTTGTAATAGTTGTTGTGGACAGTACAGACAGAGAGAGGATTTCTGTAACTAGAGAAGAACTCTA
TAAAATGTTAGCACATGAGGACCTAAGAAAAGCTGGATTGCTGATTTTTGCTAATAAACAAGATGTTAAAGAATGCATGA
CTGTAGCGGAAATCTCCCAGTTTTTGAAGCTAACTTCTATTAAAGATCACCAGTGGCATATCCAGGCATGCTGTGCTCTA
ACTGGCGAGGGATTGTGCCAAGGACTTGAATGGATGATGTCACGACTTAAGATTAGATGA

Library Parental gene expression (RPM)
SRP051959_colon 33 .99 RPM
SRP051959_heart 52 .02 RPM
SRP051959_kidney 37 .78 RPM
SRP051959_liver 29 .33 RPM
SRP051959_lung 52 .66 RPM
SRP051959_lymph_node 33 .06 RPM
SRP051959_skeletal_muscle 35 .25 RPM
SRP051959_spleen 44 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000005062 ortholog_one2many 25 retrogenes
retro_chof_1109, retro_chof_1132, retro_chof_1205, retro_chof_1218, retro_chof_1407, retro_chof_1414, retro_chof_1443, retro_chof_1573, retro_chof_1712, retro_chof_1953, retro_chof_206, retro_chof_2081, retro_chof_2131, retro_chof_2142, retro_chof_2433, retro_chof_2464, retro_chof_2470, retro_chof_2713, retro_chof_373, retro_chof_547, retro_chof_836, retro_chof_857, retro_chof_865, retro_chof_972, retro_chof_98,
Callithrix jacchus ENSCJAG00000001966 within_species_paralog 1 retrogene
retro_cjac_2938,
Cavia porcellus ENSCPOG00000005209 ortholog_one2many 1 retrogene
retro_cpor_913,
Dasypus novemcinctus ENSDNOG00000013331 ortholog_one2many 16 retrogenes
retro_dnov_105, retro_dnov_1165, retro_dnov_1244, retro_dnov_1953, retro_dnov_2159, retro_dnov_226, retro_dnov_2265, retro_dnov_2268, retro_dnov_2344, retro_dnov_2394, retro_dnov_563, retro_dnov_671, retro_dnov_713, retro_dnov_811, retro_dnov_818, retro_dnov_881,
Equus caballus ENSECAG00000023672 possible_ortholog 1 retrogene
retro_ecab_1087,
Erinaceus europaeus ENSEEUG00000009350 possible_ortholog 3 retrogenes
retro_eeur_240, retro_eeur_642, retro_eeur_699,
Felis catus ENSFCAG00000014742 possible_ortholog 2 retrogenes
retro_fcat_569, retro_fcat_65,
Homo sapiens ENSG00000162980 ortholog_one2many 5 retrogenes
retro_hsap_2549, retro_hsap_4715, retro_hsap_4768, retro_hsap_4894, retro_hsap_721,
Gorilla gorilla ENSGGOG00000002066 possible_ortholog 5 retrogenes
retro_ggor_1131, retro_ggor_1594, retro_ggor_2930, retro_ggor_2971, retro_ggor_3056,
Loxodonta africana ENSLAFG00000032104 ortholog_one2many 4 retrogenes
retro_lafr_1178, retro_lafr_1228, retro_lafr_1244, retro_lafr_599,
Microcebus murinus ENSMICG00000015788 ortholog_one2many 7 retrogenes
retro_mmur_1271, retro_mmur_1487, retro_mmur_1586, retro_mmur_1618, retro_mmur_468, retro_mmur_652, retro_mmur_923,
Macaca mulatta ENSMMUG00000010521 ortholog_one2many 5 retrogenes
retro_mmul_2519, retro_mmul_2543, retro_mmul_2630, retro_mmul_616, retro_mmul_641,
Monodelphis domestica ENSMODG00000003978 ortholog_many2many 1 retrogene
retro_mdom_75,
Mustela putorius furo ENSMPUG00000000396 possible_ortholog 2 retrogenes
retro_mputfur_1477, retro_mputfur_352,
Mus musculus ENSMUSG00000036093 ortholog_one2many 1 retrogene
retro_mmus_2232,
Nomascus leucogenys ENSNLEG00000011191 ortholog_one2many 2 retrogenes
retro_nleu_1259, retro_nleu_2280,
Otolemur garnettii ENSOGAG00000011424 ortholog_one2many 6 retrogenes
retro_ogar_1879, retro_ogar_2112, retro_ogar_2675, retro_ogar_3146, retro_ogar_3465, retro_ogar_728,
Pongo abelii ENSPPYG00000012848 ortholog_one2many 4 retrogenes
retro_pabe_3711, retro_pabe_3806, retro_pabe_3832, retro_pabe_621,
Pan troglodytes ENSPTRG00000012538 ortholog_one2many 5 retrogenes
retro_ptro_1486, retro_ptro_3134, retro_ptro_3175, retro_ptro_3262, retro_ptro_514,
Ictidomys tridecemlineatus ENSSTOG00000016326 possible_ortholog 1 retrogene
retro_itri_62,
Tupaia belangeri ENSTBEG00000011511 ortholog_one2many 8 retrogenes
retro_tbel_1173, retro_tbel_1540, retro_tbel_3202, retro_tbel_3464, retro_tbel_3681, retro_tbel_3835, retro_tbel_4207, retro_tbel_4665,
Tursiops truncatus ENSTTRG00000015564 possible_ortholog 2 retrogenes
retro_ttru_1008, retro_ttru_1843,
Vicugna pacos ENSVPAG00000002172 possible_ortholog 2 retrogenes
retro_vpac_318, retro_vpac_399,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1054 81.82 83.10
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2. retro_cjac_1111 84.26 73.94
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3. retro_cjac_1255 89.19 82.12
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4. retro_cjac_1921 88.73 78.21
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5. retro_cjac_2949 80.33 100.00
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6. retro_cjac_3920 92.74 100.00
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7. retro_cjac_4131 56.20 74.30
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8. retro_cjac_4175 81.82 54.75
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9. retro_cjac_4211 74.65 77.65
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Download FASTA sequences of all ENSCJAG00000003311 retrocopies