RetrogeneDB ID: | retro_cjac_1275 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 14:43293528..43293950(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000005912 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.62 % |
Parental protein coverage: | 60. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR |
YTLGLFD.AGQEDYDRL..LSYPQTDVFL.CF..VSPSSFENVKEKWVPEIT.HCPKTPF.LVGT.IDLR | |
Retrocopy | YTLGLFDIAGQEDYDRLQSLSYPQTDVFLLCF*MVSPSSFENVKEKWVPEITQHCPKTPFMLVGT*IDLR |
Parental | DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD-EAILAALEPPEPKKSRRCV |
DDPSTIEKL.KNK.K.ITPETAEKLA.DLKAVK.VECSA.TQKGLKNVFD..AILAALEPPEP.KS.RCV | |
Retrocopy | DDPSTIEKLPKNKEKAITPETAEKLAGDLKAVKCVECSAHTQKGLKNVFD<QAILAALEPPEPRKSHRCV |
Parental | LL |
LL | |
Retrocopy | LL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .02 RPM | 66 .78 RPM |
SRP051959_heart | 0 .19 RPM | 40 .97 RPM |
SRP051959_kidney | 0 .00 RPM | 45 .24 RPM |
SRP051959_liver | 0 .22 RPM | 34 .98 RPM |
SRP051959_lung | 0 .00 RPM | 68 .11 RPM |
SRP051959_lymph_node | 0 .00 RPM | 80 .73 RPM |
SRP051959_skeletal_muscle | 1 .35 RPM | 27 .52 RPM |
SRP051959_spleen | 0 .02 RPM | 80 .80 RPM |