Parental gene:

ENSCJAG00000005912

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:56032728..56068295(+)


>ENSCJAG00000005912
ATGTCTCCTGATATCCTACACAACAAACAAATTTCCATCAGAATATGTACCGACTATCTTGACTTCTCATGGGTAAATTA
TATACACTTTAAAATTAAACAGCTGAAAAATCAGTGGAAAGTCAGAAGGGGTGACACAGGGTTTGCAAGAAGTGCTGGGA
GGCAAAACTCCCATAGACAAGATTCTAACGAGTGGTGGTCTCAATTTGGTGAAGTATGCGCTACATCTTGGAATGAGGTT
TTTGACAACTATGCAGTCACAGTTATGATTGGTGGAGAGCCATATACTCTTGGACTTTTTGATACTGCAGGGCAAGAGGA
TTATGACAGATTACGACCGCTGAGTTATCCACAAACAGATGTATTTCTAGTCTGTTTTTCAGTGGTTTCTCCATCTTCAT
TTGAAAATGTGAAAGAAAAGTGGGTGCCTGAGATAACTCACCACTGTCCAAAGACTCCTTTCTTGCTTGTTGGGACCCAA
ATTGATCTCAGAGATGACCCCTCTACTATTGAGAAACTTGCCAAGAACAAACAGAAACCTATCACTCCAGAGACTGCTGA
AAAGCTGGCCCGTGACCTGAAGGCTGTCAAGTATGTGGAGTGTTCTGCACTCACACAGAAAGGCCTAAAGAATGTATTTG
ACGAAGCAATATTGGCTGCCCTGGAGCCTCCAGAACCGAAGAAGAGCCGCAGGTGTGTGCTGCTATGA

Library Parental gene expression (RPM)
SRP051959_spleen 80 .80 RPM
SRP051959_skeletal_muscle 27 .52 RPM
SRP051959_lymph_node 80 .73 RPM
SRP051959_lung 68 .11 RPM
SRP051959_liver 34 .98 RPM
SRP051959_kidney 45 .24 RPM
SRP051959_heart 40 .97 RPM
SRP051959_colon 66 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000014707 possible_ortholog 5 retrogenes
retro_cfam_1587, retro_cfam_1970, retro_cfam_2189, retro_cfam_88, retro_cfam_89,
Choloepus hoffmanni ENSCHOG00000005306 possible_ortholog 10 retrogenes
retro_chof_103, retro_chof_1044, retro_chof_1195, retro_chof_1853, retro_chof_2055, retro_chof_2105, retro_chof_2331, retro_chof_2407, retro_chof_50, retro_chof_800,
Callithrix jacchus ENSCJAG00000000685 within_species_paralog 1 retrogene
retro_cjac_2403,
Callithrix jacchus ENSCJAG00000002144 other_paralog 4 retrogenes
retro_cjac_1158, retro_cjac_1954, retro_cjac_2917, retro_cjac_847,
Callithrix jacchus ENSCJAG00000018194 other_paralog 1 retrogene
retro_cjac_2687,
Cavia porcellus ENSCPOG00000006543 possible_ortholog 4 retrogenes
retro_cpor_1168, retro_cpor_286, retro_cpor_33, retro_cpor_887,
Dipodomys ordii ENSDORG00000010374 possible_ortholog 3 retrogenes
retro_dord_17, retro_dord_464, retro_dord_552,
Equus caballus ENSECAG00000019180 possible_ortholog 1 retrogene
retro_ecab_11,
Echinops telfairi ENSETEG00000004443 possible_ortholog 1 retrogene
retro_etel_2010,
Felis catus ENSFCAG00000004853 ortholog_many2many 4 retrogenes
retro_fcat_129, retro_fcat_1421, retro_fcat_1579, retro_fcat_896,
Homo sapiens ENSG00000070831 possible_ortholog 6 retrogenes
retro_hsap_2775, retro_hsap_2968, retro_hsap_3028, retro_hsap_3404, retro_hsap_3848, retro_hsap_4013,
Gorilla gorilla ENSGGOG00000024439 possible_ortholog 5 retrogenes
retro_ggor_1932, retro_ggor_2057, retro_ggor_2303, retro_ggor_2593, retro_ggor_2695,
Myotis lucifugus ENSMLUG00000013365 possible_ortholog 4 retrogenes
retro_mluc_1076, retro_mluc_1864, retro_mluc_2456, retro_mluc_905,
Macaca mulatta ENSMMUG00000022009 possible_ortholog 8 retrogenes
retro_mmul_1449, retro_mmul_1612, retro_mmul_1685, retro_mmul_1900, retro_mmul_1932, retro_mmul_24, retro_mmul_349, retro_mmul_598,
Monodelphis domestica ENSMODG00000016078 ortholog_one2many 3 retrogenes
retro_mdom_18, retro_mdom_181, retro_mdom_537,
Mustela putorius furo ENSMPUG00000015999 possible_ortholog 2 retrogenes
retro_mputfur_308, retro_mputfur_957,
Mus musculus ENSMUSG00000006699 possible_ortholog 3 retrogenes
retro_mmus_2816, retro_mmus_2995, retro_mmus_3170,
Nomascus leucogenys ENSNLEG00000008198 possible_ortholog 4 retrogenes
retro_nleu_2029, retro_nleu_2949, retro_nleu_3007, retro_nleu_679,
Oryctolagus cuniculus ENSOCUG00000009986 possible_ortholog 1 retrogene
retro_ocun_60,
Otolemur garnettii ENSOGAG00000014261 possible_ortholog 1 retrogene
retro_ogar_131,
Ochotona princeps ENSOPRG00000005331 possible_ortholog 2 retrogenes
retro_opri_868, retro_opri_995,
Pongo abelii ENSPPYG00000001755 possible_ortholog 6 retrogenes
retro_pabe_2240, retro_pabe_2461, retro_pabe_2801, retro_pabe_3215, retro_pabe_3239, retro_pabe_3295,
Rattus norvegicus ENSRNOG00000013536 possible_ortholog 1 retrogene
retro_rnor_2062,
Sorex araneus ENSSARG00000005184 possible_ortholog 3 retrogenes
retro_sara_10, retro_sara_220, retro_sara_3,
Sus scrofa ENSSSCG00000003520 possible_ortholog 1 retrogene
retro_sscr_899,
Ictidomys tridecemlineatus ENSSTOG00000000805 possible_ortholog 4 retrogenes
retro_itri_1158, retro_itri_1602, retro_itri_1615, retro_itri_431,
Tupaia belangeri ENSTBEG00000002614 ortholog_one2one 17 retrogenes
retro_tbel_1091, retro_tbel_1379, retro_tbel_1697, retro_tbel_1711, retro_tbel_183, retro_tbel_2320, retro_tbel_2447, retro_tbel_2721, retro_tbel_4016, retro_tbel_4168, retro_tbel_4184, retro_tbel_4273, retro_tbel_4427, retro_tbel_584, retro_tbel_585, retro_tbel_860, retro_tbel_873,
Tarsius syrichta ENSTSYG00000000679 possible_ortholog 11 retrogenes
retro_tsyr_1575, retro_tsyr_1597, retro_tsyr_1854, retro_tsyr_1976, retro_tsyr_2048, retro_tsyr_2098, retro_tsyr_352, retro_tsyr_387, retro_tsyr_539, retro_tsyr_66, retro_tsyr_963,
Tursiops truncatus ENSTTRG00000005708 possible_ortholog 2 retrogenes
retro_ttru_118, retro_ttru_54,
Vicugna pacos ENSVPAG00000006919 possible_ortholog 3 retrogenes
retro_vpac_13, retro_vpac_451, retro_vpac_542,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_751 80.69 60.85
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2. retro_cjac_911 89.89 98.43
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3. retro_cjac_1275 86.62 60.00
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4. retro_cjac_1808 83.11 75.92
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5. retro_cjac_1826 76.51 86.39
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6. retro_cjac_2251 71.25 81.68
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Download FASTA sequences of all ENSCJAG00000005912 retrocopies