RetrogeneDB ID: | retro_cjac_1808 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 2:67082918..67083357(+) | ||
Located in intron of: | ENSCJAG00000019193 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000005912 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.11 % |
Parental protein coverage: | 75.92 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | NKFPS--EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV |
NKFPS....V.TVFDN.AVTVMIGGEPYTLGLFDTAGQEDYD.L.PLSY.Q.DVFLVCFS.VSPS.FENV | |
Retrocopy | NKFPSTPNNVLTVFDNHAVTVMIGGEPYTLGLFDTAGQEDYDGLGPLSYSQIDVFLVCFSAVSPSPFENV |
Parental | KEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYV-ECSALTQ |
KE.WVPEITHHCPKTPFLLVG...DLRDDPSTIEKLAKNKQ...TPETA.KLA.DLKAV.YV..CSALTQ | |
Retrocopy | KENWVPEITHHCPKTPFLLVGAYTDLRDDPSTIEKLAKNKQ-DVTPETAKKLAHDLKAVRYV>KCSALTQ |
Parental | RGLKNVFD |
.GLKNVFD | |
Retrocopy | KGLKNVFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .51 RPM | 66 .78 RPM |
SRP051959_heart | 0 .60 RPM | 40 .97 RPM |
SRP051959_kidney | 0 .67 RPM | 45 .24 RPM |
SRP051959_liver | 0 .28 RPM | 34 .98 RPM |
SRP051959_lung | 1 .01 RPM | 68 .11 RPM |
SRP051959_lymph_node | 1 .00 RPM | 80 .73 RPM |
SRP051959_skeletal_muscle | 0 .46 RPM | 27 .52 RPM |
SRP051959_spleen | 0 .88 RPM | 80 .80 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3404 |
Gorilla gorilla | retro_ggor_2303 |
Pongo abelii | retro_pabe_2801 |