Parental gene:

EWSR1, ENSCPOG00000009502

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_4:13781483..13805951(-)


>ENSCPOG00000009502
TTGTTTCCTCCAGATTATAGTACCTACAGCCAAGCTGCAGCCCAACAGGGCTACAGTGCTTACACTGCCCAGCCAACTCA
AGGATATGCACAGACCACCCAGGCGTATGGGCAACAAAGCTATGGAACCTATGGACAGCCTACTGATGTCAGCTATACCC
AGGCTCAGACCACTGCCACCTATGGGCAGACTGCATATGCAACTTCTTATGGACAGCCTCCCACTGGTTATACTACTCCA
GCTGCACCCCAGGCATATAGCCAACCTGTCCAGGGTTATGGCACTGGTGCTTATGACACCACCACTGCTACAGTCACCAC
CACCCAGGCCTCTTACGCAGCTCAGTCTGCATATGGCACTCAGCCTGCTTACCCAGCCTATGGGCAGCAACCAGCAGCTA
CTGCACCTGCAAGACCACAGGACGGTAACAAGCCCACTGAGACTAATCAACCTCAGTCTAGCACAGGGGGTTATAACCAG
CCCAGCCTAGGATATGGACAGAGTAACTACAGTTATCCTCAGGTTCCTGGAAGCTACCCGATGCAGCCAGTCACTGCACC
TCCATCCTACCCTCCTACCAGCTATTCCTCTACACAGCCGACTAGTTATGATCAGAGCAGTTACTCTCCCACTAGTTATC
CCCCCCAGACTGGATCCTACAGCCAGGCTCCAAGTCAATATAGCCAACAGAGCAGCAGCTACGGGCAGCAGAGTTCATTC
CGACAGGACCACCCCAGTAGCATGGGTGTTTATGGGCAGGAGTCTGGAGGATTTTCCGGACCAGGAGAGAACCGGAGCAT
GAGTGGCCCTGATAACCGGGGCAGGGGAAGAGGGGGATTTGATCGTGGAGGCATGAGCAGAGGTGGGCGGGGAGGAGGAC
GCGGTGGAATGGGCAGCGCTGGAGAGCGAGGTGGCTTCAATAAGCCTGGTGGACCCATGGATGAAGGACCAGATCTTGAT
CTAGGCCCTCCCATAGATCCTGATGAAGACTCTGACAACAGTGCAATTTATGTACAAGGATTAAATGACAATGTAACACT
TGATGATCTGACAGACTTCTTTAAGCAATGTGGGGTTGTTAAGATTAACAAGAGAACTGGGCAACCCATGATCCACATCT
ATCTGGACAAGGAAACAGGAAAGCCCAAAGGTGATGCCACGGTGTCCTATGAAGATCCACCGACTGCCAAGGCTGCTGTG
GATTGGTTTGATGGGAAAGATTTTCAAGGAAGCAAACTTAAAGTCTCCCTTGCTCGGAAGAAGCCTCCGATGAACAGCAT
GCGAGGTGGCATGCCACCCCGTGAAGGCAGAGGCATGCCACCACCACTCCGTGGAGGTCCAGGTGGCCCAGGAGGTCCTG
GAGGACCCATGGGTCGCATGGGAGGCCGTGGAGGAGACAGAGGAGGTTTTCCTCCAAGAGGCCCCCGGGGTTCCCGAGGA
AACCCCTCTGGTGGAGGAAACGTCCAACATCGAGCTGGAGATTGGCAGTGTCCCAATCCGTACGTATTTTCATTATTGAT
TGCCTGGAGAACAGAATGCAACCAGTGTAAGGCCCCAAAACCTGAAGGCTTCCTCCCGCCACCCTTCCCACCCCCAGGTG
GTGATCGTGGTAGAGGTGGCCCTGGTGGCATGCGGGGAGGAAGAGGTGGCCTCATGGACCGTGGTGGTCCTGGTGGAATG
TTCAGAGGTGGCCGTGGTGGAGACAGAGGTGGCTTCCGTGGTGGCCGTGGCATGGACCGAGGTGGCTTTGGCGGAGGAAG
ACGAGGCGGTCCAGGAGGGCCCCCTGGACCTTTGATGGAACAAATGGGAGGAAGAAGAGGTGGACGTGGAGGACCTGGAA
AAATGGATAAAGGTGAGCACCGTCAGGAGCGCAGAGACCGGCCCTACTAG

Library Parental gene expression (RPM)
SRP017611_brain 128 .43 RPM
SRP017611_kidney 171 .90 RPM
SRP017611_liver 83 .96 RPM
SRP040447_lung 212 .66 RPM
SRP040447_skeletal_muscle 71 .17 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000012160 ortholog_one2many 8 retrogenes
retro_cfam_1142, retro_cfam_1183, retro_cfam_1225, retro_cfam_133, retro_cfam_1397, retro_cfam_1736, retro_cfam_1889, retro_cfam_560,
Callithrix jacchus ENSCJAG00000019987 ortholog_one2many 4 retrogenes
retro_cjac_1716, retro_cjac_2022, retro_cjac_2813, retro_cjac_2911,
Felis catus ENSFCAG00000004243 ortholog_one2one 1 retrogene
retro_fcat_519,
Macropus eugenii ENSMEUG00000008703 possible_ortholog 1 retrogene
retro_meug_1424,
Myotis lucifugus ENSMLUG00000012058 ortholog_one2many 1 retrogene
retro_mluc_328,
Monodelphis domestica ENSMODG00000008679 possible_ortholog 1 retrogene
retro_mdom_279,
Mustela putorius furo ENSMPUG00000013432 ortholog_one2one 2 retrogenes
retro_mputfur_56, retro_mputfur_572,
Oryctolagus cuniculus ENSOCUG00000004432 possible_ortholog 2 retrogenes
retro_ocun_1346, retro_ocun_242,
Ictidomys tridecemlineatus ENSSTOG00000023177 possible_ortholog 1 retrogene
retro_itri_1892,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1353 59.79 59.30
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Download FASTA sequences of all ENSCPOG00000009502 retrocopies