Parental gene: | ENSCJAG00000019987 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 1:192162574..192194890(+) |
>ENSCJAG00000019987
ATGGCGTCCACGGATTACAGTACCTATAGCCAGGCTGCAGCACAGCAGGGCTACAGTGCTTACACCGCCCAGCCCACTCA
AGGATATGCACAGACCACCCAGGCATATGGGCAACAAAGCTATGGAACCTATGGACAGCCCACTGATGTTAGCTATACCC
AGGCTCAGACCACTGCAACTTATGGGCAGACCGCCTATGCAACTTCTTATGGACAGCCTCCCACTGTAGAAGGGACCAGT
ACAGGTTATACTACTCCAACTGCCCCCCAGGCATACAGCCAGCCTGTCCAGGGGTATGGCACTGGTGCTTATGATACCAC
CACTGCTACAGTCACCACCACCCAGGCCTCCTACGCAGCTCAGTCTGCATATGGCACTCAGCCTGCTTATCCAGCCTATG
GGCAGCAGCCAGCAGCCACTGCACCTACAAGACCGCAGGATGGTAACAAGCCCACTGAGACTAGTCAACCTCAATCTAGC
ACAGGAGGTTACAACCAGCCCAGCCTAGGATATGGACAGAGTAACTACAGCTATCCCCAGGTACCTGGGAGCTACCCTAT
GCAGCCAGTTACCGCACCTCCATCCTACCCTCCTACCAGCTATTCCTCTACACAGCCGACTAGTTATGATCAAAGCAGTT
ACTCTCAGCAGAACACCTATGGGCAACCGAGCAGCTATGGACAGCAGAGTAGCTATGGTCAACAAAGCAGCTATGGGCAG
CAGCCTCCCACTAGTTACCCACCCCAAACTGGATCCTACAGCCAGGCTCCAAGTCAATATAGCCAACAGAGCAGCAGCTA
CGGGCAGCAGAGTTCATTCCGACAGGACCACCCCAGTAGCATGGGTGTTTATGGGCAGGAGTCTGGAGGATTTTCCGGAC
CAGGAGAGAACCGGAGCATGAGTGGCCCTGATAACCGGGGCAGGGGAAGAGGGGGATTTGATCGTGGAGGCATGAGCAGA
GGTGGGCGGGGAGGAGGACGCGGTGGAATGGGCGCTGGAGAGCGAGGTGGCTTCAATAAGCCTGGTGGACCCATGGACGA
AGGACCAGATCTTGATCTAGGCCCACCTGTAGATCCAGATGAAGATTCTGACAACAGTGCAATTTATGTACAAGGATTAA
ATGATAATGTGACTCTAGATGATCTGGCAGACTTCTTTAAGCAGTGTGGGGTTGTTAAGATGAACAAGAGAACTGGGCAA
CCCATGATCCACATCTACCTGGACAAGGAAACAGGAAAGCCCAAAGGCGATGCCACAGTATCCTATGAAGACCCACCTAC
TGCCAAGGCTGCCGTGGAGTGGTTTGACGGTAAAGACTTTCAAGGGAGCAAACTTAAAGTCTCTCTTGCTCGGAAGAAGC
CTCCAATGAACAGTATGCGAGGCGGTATGCCACCCCGTGAGGGCAGAGGGATGCCACCACCACTCCGTGGAGGTCCAGGA
GGCCCAGGAGGTCCTGGGGGACCCATGGGTCGCATGGGAGGCCGTGGAGGAGATAGAGGAGGCTTCCCTCCCAGAGGACC
CCGGGGTTCCCGAGGGAACCCCTCCGGCGGAGGAAATGTCCAGCACCGAGCTGGAGACTGGCAGTGTCCCAATCCGGGTT
GTGGAAACCAGAACTTCGCCTGGAGAACAGAGTGCAACCAGTGTAAGGCCCCAAAGCCTGAAGGCTTCCTCCCGCCACCC
TTCCCGCCCCCGGGTGGTGATCGTGGCAGAGGTGGCCCTGGTGGCATGCGGGGAGGAAGAGGTGGCCTCATGGATCGTGG
TGGTCCCGGTGGAATGTTCAGAGGTGGCCGTGGAGGAGACAGAGGTGGCTTCCGTGGTGGCCGGGGCATGGACCGAGGTG
GCTTTGGTGGAGGAAGACGAGGTGGCCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAGGAAGAAGAGGAGGA
CGTGGAGGACCTGGAAAAATGGATAAAGGCGAGCACCGTCAGGAGCGCAGAGATCGGCCCTATTAG
ATGGCGTCCACGGATTACAGTACCTATAGCCAGGCTGCAGCACAGCAGGGCTACAGTGCTTACACCGCCCAGCCCACTCA
AGGATATGCACAGACCACCCAGGCATATGGGCAACAAAGCTATGGAACCTATGGACAGCCCACTGATGTTAGCTATACCC
AGGCTCAGACCACTGCAACTTATGGGCAGACCGCCTATGCAACTTCTTATGGACAGCCTCCCACTGTAGAAGGGACCAGT
ACAGGTTATACTACTCCAACTGCCCCCCAGGCATACAGCCAGCCTGTCCAGGGGTATGGCACTGGTGCTTATGATACCAC
CACTGCTACAGTCACCACCACCCAGGCCTCCTACGCAGCTCAGTCTGCATATGGCACTCAGCCTGCTTATCCAGCCTATG
GGCAGCAGCCAGCAGCCACTGCACCTACAAGACCGCAGGATGGTAACAAGCCCACTGAGACTAGTCAACCTCAATCTAGC
ACAGGAGGTTACAACCAGCCCAGCCTAGGATATGGACAGAGTAACTACAGCTATCCCCAGGTACCTGGGAGCTACCCTAT
GCAGCCAGTTACCGCACCTCCATCCTACCCTCCTACCAGCTATTCCTCTACACAGCCGACTAGTTATGATCAAAGCAGTT
ACTCTCAGCAGAACACCTATGGGCAACCGAGCAGCTATGGACAGCAGAGTAGCTATGGTCAACAAAGCAGCTATGGGCAG
CAGCCTCCCACTAGTTACCCACCCCAAACTGGATCCTACAGCCAGGCTCCAAGTCAATATAGCCAACAGAGCAGCAGCTA
CGGGCAGCAGAGTTCATTCCGACAGGACCACCCCAGTAGCATGGGTGTTTATGGGCAGGAGTCTGGAGGATTTTCCGGAC
CAGGAGAGAACCGGAGCATGAGTGGCCCTGATAACCGGGGCAGGGGAAGAGGGGGATTTGATCGTGGAGGCATGAGCAGA
GGTGGGCGGGGAGGAGGACGCGGTGGAATGGGCGCTGGAGAGCGAGGTGGCTTCAATAAGCCTGGTGGACCCATGGACGA
AGGACCAGATCTTGATCTAGGCCCACCTGTAGATCCAGATGAAGATTCTGACAACAGTGCAATTTATGTACAAGGATTAA
ATGATAATGTGACTCTAGATGATCTGGCAGACTTCTTTAAGCAGTGTGGGGTTGTTAAGATGAACAAGAGAACTGGGCAA
CCCATGATCCACATCTACCTGGACAAGGAAACAGGAAAGCCCAAAGGCGATGCCACAGTATCCTATGAAGACCCACCTAC
TGCCAAGGCTGCCGTGGAGTGGTTTGACGGTAAAGACTTTCAAGGGAGCAAACTTAAAGTCTCTCTTGCTCGGAAGAAGC
CTCCAATGAACAGTATGCGAGGCGGTATGCCACCCCGTGAGGGCAGAGGGATGCCACCACCACTCCGTGGAGGTCCAGGA
GGCCCAGGAGGTCCTGGGGGACCCATGGGTCGCATGGGAGGCCGTGGAGGAGATAGAGGAGGCTTCCCTCCCAGAGGACC
CCGGGGTTCCCGAGGGAACCCCTCCGGCGGAGGAAATGTCCAGCACCGAGCTGGAGACTGGCAGTGTCCCAATCCGGGTT
GTGGAAACCAGAACTTCGCCTGGAGAACAGAGTGCAACCAGTGTAAGGCCCCAAAGCCTGAAGGCTTCCTCCCGCCACCC
TTCCCGCCCCCGGGTGGTGATCGTGGCAGAGGTGGCCCTGGTGGCATGCGGGGAGGAAGAGGTGGCCTCATGGATCGTGG
TGGTCCCGGTGGAATGTTCAGAGGTGGCCGTGGAGGAGACAGAGGTGGCTTCCGTGGTGGCCGGGGCATGGACCGAGGTG
GCTTTGGTGGAGGAAGACGAGGTGGCCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAGGAAGAAGAGGAGGA
CGTGGAGGACCTGGAAAAATGGATAAAGGCGAGCACCGTCAGGAGCGCAGAGATCGGCCCTATTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 60 .19 RPM |
| SRP051959_skeletal_muscle | 41 .91 RPM |
| SRP051959_lymph_node | 69 .72 RPM |
| SRP051959_lung | 71 .76 RPM |
| SRP051959_liver | 43 .10 RPM |
| SRP051959_kidney | 57 .09 RPM |
| SRP051959_heart | 47 .04 RPM |
| SRP051959_colon | 44 .73 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000008298 | possible_ortholog | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000012160 | ortholog_many2many | 8 retrogenes | |
| Cavia porcellus | ENSCPOG00000009502 | ortholog_one2many | 1 retrogene | |
| Felis catus | ENSFCAG00000004243 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000182944 | possible_ortholog | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000012212 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000008703 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000012058 | ortholog_many2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000008679 | possible_ortholog | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000013432 | ortholog_one2many | 2 retrogenes | |
| Mus musculus | ENSMUSG00000009079 | possible_ortholog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000004432 | possible_ortholog | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000011684 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000014218 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000023177 | possible_ortholog | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000011881 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1716 | 93.29 | 64.45 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2022 | 93.60 | 70.17 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2813 | 83.03 | 58.08 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_2911 | 87.73 | 57.79 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000019987 retrocopies