RetrogeneDB ID: | retro_cfam_1225 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 27:26048077..26049131(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000012292 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000012160 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.1 % |
Parental protein coverage: | 52.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | PTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNRGRGRGG |
PTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQ.HPSSMGVYGQESGGFSGPGEN.SMSG..NRGRGRGG | |
Retrocopy | PTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQYHPSSMGVYGQESGGFSGPGENQSMSGLENRGRGRGG |
Parental | FDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLDKGPPVDPDEDSDNSAIYVQGLNDNVTLDD |
FD.GG.S.GG.GGG.GGMG.AGERGGFNKPGG.MDEGP.L..GPPVDPDEDSDN.AIYVQGLNDNVTLDD | |
Retrocopy | FDCGGISGGGWGGGLGGMG-AGERGGFNKPGGSMDEGPALNLGPPVDPDEDSDNRAIYVQGLNDNVTLDD |
Parental | LADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR |
LADFFKQCGV.KMNKRTGQPMIHIYLDKE.GKPKGDATVSYEDPPTAKAAVEWFDG.DFQGSKLKVSLAR | |
Retrocopy | LADFFKQCGVNKMNKRTGQPMIHIYLDKERGKPKGDATVSYEDPPTAKAAVEWFDGRDFQGSKLKVSLAR |
Parental | KKPPMNSMRGGMPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGF-PPRGPR-GSRGNPSGGGN |
KKPPMNSMRG.MP..EG.G.PPPLRGGPGGPGGPGGPMGRMGGRGGDRGGF.P...P....R..PSGGGN | |
Retrocopy | KKPPMNSMRGRMPSSEGKGVPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGF>PQEDPGFPGRKRPSGGGN |
Parental | VQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGP |
.QHR.GDWQCP.PGCGNQNFAWRTECNQCKA.KPEGFLPPPFPPPG.DRGRGGPGGMRGGRGGLMDRG.. | |
Retrocopy | FQHRTGDWQCPIPGCGNQNFAWRTECNQCKASKPEGFLPPPFPPPGSDRGRGGPGGMRGGRGGLMDRGAL |
Parental | GGM |
G.. | |
Retrocopy | GAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 77 .74 RPM |
SRP017611_brain | 0 .00 RPM | 36 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 45 .24 RPM |
SRP017611_liver | 0 .00 RPM | 33 .94 RPM |