Parental gene:

ENSOCUG00000004432

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018723:2468147..2552674(+)


>ENSOCUG00000004432
ATGGGTCCCCCTGGACCTCCTGGCCCCACAGGTGTCCCTGGAAGTCCTGGACACATGGGACCCCCAGGCCCCGCTGGACC
CAAAGGAATCTCTGGCCGTCCAGGCGAAAAGGGCGAGAGAGGACTTCGTGGGGAGCCCGGCCCCCAGGGCTCCGAGGGGC
AGCGGGGTGAACCTGGCCCCAAGGGAGACCCCGGCGAGAAAAGCCACTGGGGGGAGGGGTTGCACCAACTGCGCGAGGCT
TTGAAGATTTTAGCTGAGAGGGTTTTAATCTTGGAAACAATGATTGGGCTCTATGATTACAGTACCTACAGCCAAGCTGC
AGCCCAGCAGGGCTACAGTGCTTACACCGCCCAGCCGACTCAAGGATATGCACAGACCAGCCAGCAGGCATATGGGCAAC
AAAGCTATGGAACCTATGGACAGCCCACTGATGTCAGCTATAGCCAGGCTCAGACCACTGCGACCTATGGGCAGACAGCC
TATGCAACTTCCTACGGACAGCCTCCCACTGGTTATACTACTCCAACTGCCCCCCAGGCATACAGCCAGCCTGTCCAGGG
GTATGGCACTGGTGCTTATGATACCACCACTGCTACAGTCACCACCACCCAGGCCTCCTATGCAGCTCAGTCTGCATATG
GCACTCAGCCTGCTTACCCAGCCTATGGGCAGCAGCCCACAGCCACTGCACCTGCAAGACCACAGGATGGTAACAAGCCA
GCAGAGACTAGTCAACCCCAGTCTAGCACTGGGGGTTACAACCAGCCCAGCCTAGGATATGGACAGAGTAACTACAGTTA
TCCCCAGGTACCTGGGAGCTACCCCATGCAGCCAGTCACCGCACCACCATCCTATCCTCCTACCAGCTACTCCTCTTCCC
AGCCGACTAGTTACGATCAGAGCAGTTACTCTCAGCAGAACACCTACGGGCAGCCGAGCAGCTATGGACAGCAGAGTAGC
TATGGTCAACAAAGCAGCTATGGGCAGCAGCCTCCCACTAGTTACCCCCCCCAAACTGGATCCTACAGCCAGGCTCCAAG
TCAATATAGCCAACAGAGCAGCAGCTACGGGCAGCAGAGTTCATTCCGACAGGACCACCCCAGTAGCATGGGTGTTTATG
GGCAGGAGTCTGGAGGATTTTCCGGACCAGGAGAGAACCGGAGCATGAGTGGCCCTGATAACCGGGGCAGGGGAAGAGGG
GGATTTGATCGTGGAGGCATGAGCAGAGGTGGGCGGGGAGGAGGACGCGGTGGAATGGGCAGCGCTGGAGAGCGAGGTGG
CTTCAATAAGCCTGGTGGACCCATGGATGAAGGACCAGATCTTGATCTAGAAGGCCCACCTGTAGATCTGGATGAAGACT
CTGACAACAGTGCGATTTATGTGCAAGGATTAAATGATAATGTGACTGTGGATGATCTGGCAGACTTCTTTAAGCAGTGT
GGGGTTGTTAAGATGAACAAGAGAACTGGGCAACCCATGATCCATGTATACCTGGACAAGGAGACAGGAAAGCCCAAAGG
TGATGCCACAGTGTCCTATGAAGACCCACCAACCGCCAAGGCTGCTGTGGAATGGTTTGATGGGAAAGATTTTCAAGGGA
GCAAACTGAAAGTGTCTCTGGCCCGGAAGAAGCCTCCAATGAACAGCATGCGGGGTGGCATGCCGCCCCGGGAGGGCCGA
GGGATGCCGCCGCCCCTCCGCGGAGGTCCAGGTGGCCCCGGAGGTCCTGGTGGGCCCATGGGTCGCATGGGAGGCCGTGG
AGGAGACCGAGGCGGCTTCCCCCCGAGAGGGCCCCGGGGTTCCCGAGGGAACCCTTCTGGAGGAGGGAACGTCCAGCACC
GAGCTGGAGACTGGCAATGTCCCAACCCGGGCTGTGGAAACCAGAACTTTGCCTGGAGAACAGAATGCAACCAGTGTAAG
GCCCCGAAGCCCGAGGGCTTCCTGCCACCACCCTTCCCGCCCCCGGGTGGCGATCGTGGCAGAGGCGGCCCTGGTGGCAT
GAGGGGTGGAAGAGGTGGCCTCATGGACCGCGGTGGGCCCGGTGGAATGTTCAGAGGGGGCCGTGGTGGAGACAGAGGTG
GCTTCCGTGGTGGCCGGGGCATGGACCGAGGTGGCTTTGGAGGAGGAAGACGAGGTGGCCCAGGGGGTCCACCTGGACCT
ATGGATCAGATGGGAGTAAGAAGAGGTGGCCGTGGAGGCCCTGGAAAAATGGATAAAGGGGAGCACCGCCAGGAGCGCAG
AGACCGGCCCTACTAG

Library Parental gene expression (RPM)
SRP017611_liver 34 .14 RPM
SRP017611_kidney 59 .60 RPM
SRP017611_brain 71 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008298 possible_ortholog 2 retrogenes
retro_amel_191, retro_amel_959,
Canis familiaris ENSCAFG00000012160 possible_ortholog 8 retrogenes
retro_cfam_1142, retro_cfam_1183, retro_cfam_1225, retro_cfam_133, retro_cfam_1397, retro_cfam_1736, retro_cfam_1889, retro_cfam_560,
Callithrix jacchus ENSCJAG00000019987 possible_ortholog 4 retrogenes
retro_cjac_1716, retro_cjac_2022, retro_cjac_2813, retro_cjac_2911,
Cavia porcellus ENSCPOG00000009502 possible_ortholog 1 retrogene
retro_cpor_1353,
Felis catus ENSFCAG00000004243 possible_ortholog 1 retrogene
retro_fcat_519,
Homo sapiens ENSG00000182944 possible_ortholog 1 retrogene
retro_hsap_463,
Gorilla gorilla ENSGGOG00000012212 possible_ortholog 1 retrogene
retro_ggor_444,
Macropus eugenii ENSMEUG00000008703 possible_ortholog 1 retrogene
retro_meug_1424,
Myotis lucifugus ENSMLUG00000012058 possible_ortholog 1 retrogene
retro_mluc_328,
Monodelphis domestica ENSMODG00000008679 possible_ortholog 1 retrogene
retro_mdom_279,
Mustela putorius furo ENSMPUG00000013432 possible_ortholog 2 retrogenes
retro_mputfur_56, retro_mputfur_572,
Mus musculus ENSMUSG00000009079 ortholog_one2many 1 retrogene
retro_mmus_1379,
Pongo abelii ENSPPYG00000011684 possible_ortholog 1 retrogene
retro_pabe_1769,
Pan troglodytes ENSPTRG00000014218 possible_ortholog 1 retrogene
retro_ptro_350,
Ictidomys tridecemlineatus ENSSTOG00000023177 possible_ortholog 1 retrogene
retro_itri_1892,
Tursiops truncatus ENSTTRG00000011881 possible_ortholog 1 retrogene
retro_ttru_1366,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_242 96.95 86.95
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2. retro_ocun_1346 82.63 56.06
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Download FASTA sequences of all ENSOCUG00000004432 retrocopies