Parental gene: | ENSCAFG00000012160 |
| Aliases: | None |
| Description: | None |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 26:22582864..22607810(+) |
>ENSCAFG00000012160
TTGTTTTCTCTAGATTACAGTACCTACAGCCAAGCTGCAGCCCAGCAGGGCTACAGTGCATACACCGCCCAACCAACTCA
AGGATATGCACAGACCACCCAGCAGGCATATGGGCAGCAGAGTTATGGAACCTATGGACAGCCCACTGATGTCAGCTATA
CCCAGGCTCAGACCACTGCGACCTATGGGCAGACCGCCTATGCAACTTCTTATGGACAGCCTCCCGCTGGTTATACTACT
CCAACTGCCCCCCAGGCATACAGTCAGCCTGTCCAGGGGTACGGCACTGGTGCTTATGATACCACCACTGCTACGGTCAC
TACCACCCAGGCCTCCTATGCAGCTCAGTCTGCATATGGCACTCAGCCTGCTTACCCAGCCTATGGGCAGCAGCCAGCAG
CCACCGCACCTGCAAGACCACAGGATGGTAACAAACCCGCTGAGACTAGTCAACCTCAATCTAGCACAGGGGGTTACAAC
CAGCCCAGCCTAGGATATGGACAGAGTAACTACAGTTATCCCCAGGTACCTGGGAGCTACCCCATGCAGCCAGTCACAGC
ACCACCATCTTATCCTCCTACCAGGTTTAATAGCAGTTCTTTGAAGCTTTATCATTACTCAAGAAGCTACTCCTCTACAC
AGCCGACTAGTTATGATCAGAGCAGTTACTCTCAGCAGAACACCTATGGGCAGCCGAGCAGCTATGGACAGCAGAGTAGC
TATGGTCAACAAAGCAGCTATGGGCAGCAGCCGCCCACTAGTTATCCCCCCCAAACTGGATCCTACAGCCAGGCTCCAAG
TCAATATAGCCAACAGAGCAGCAGCTACGGGCAGCAGAGTTCATTCCGACAGGACCACCCCAGTAGCATGGGTGTTTATG
GGCAGGAGTCTGGAGGATTTTCCGGACCAGGAGAGAACCGGAGCATGAGTGGCCCTGATAACCGGGGCAGGGGAAGAGGG
GGATTTGATCGTGGAGGCATGAGCAGAGGTGGGCGGGGAGGAGGACGCGGTGGAATGGGCAGCGCTGGAGAGCGAGGTGG
CTTCAATAAGCCTGGTGGACCCATGGATGAAGGACCAGATCTTGATAAAGGCCCACCTGTAGATCCAGATGAAGACTCTG
ACAACAGTGCAATTTATGTGCAAGGCCTAAATGACAATGTGACTCTAGATGATCTGGCTGACTTCTTTAAGCAATGTGGA
GTTGTTAAGATGAACAAGAGAACCGGACAACCCATGATCCATATCTACTTGGACAAGGAAACAGGAAAGCCCAAAGGTGA
TGCTACAGTATCCTATGAAGACCCACCAACTGCCAAGGCTGCTGTGGAGTGGTTTGATGGGAAAGATTTTCAAGGAAGCA
AACTTAAGGTTTCTCTTGCTCGGAAGAAACCTCCAATGAACAGCATGCGGGGTGGTATGCCTCCCCGTGAGGGCAGAGGG
ATGCCACCGCCACTCCGTGGAGGTCCAGGGGGCCCAGGAGGTCCTGGGGGCCCCATGGGTCGCATGGGAGGCCGTGGAGG
AGACAGAGGTGGCTTTCCCCCAAGAGGACCCCGGGGTTCCCGAGGGAACCCATCTGGAGGAGGAAACGTCCAGCACCGAG
CTGGGGACTGGCAGTGCCCCAATCCGGGGTGTGGAAACCAGAACTTCGCCTGGAGAACAGAATGCAACCAGTGTAAGGCC
CCGAAGCCTGAAGGCTTCCTTCCACCACCCTTCCCGCCCCCGGGCGGTGACCGTGGCAGAGGTGGCCCTGGTGGCATGCG
GGGAGGAAGAGGTGGCCTCATGGACCGCGGTGGTCCCGGTGGGATGTTCAGAGGTGGCCGCGGTGGAGACAGAGGGGGCT
TCCGTGGTGGCCGGGGCATGGACCGAGGTGGCTTTGGCGGAGGAAGACGAGGCGGTCCTGGTGGGCCCCCTGGACCTTTG
ATGGAACAGATGGGAGGAAGAAGAGGCGGGCGTGGAGGACCTGGAAAAATGGATAAAGGCGAGCACCGTCAGGAGCGCAG
AGACCGGCCCTACTAG
TTGTTTTCTCTAGATTACAGTACCTACAGCCAAGCTGCAGCCCAGCAGGGCTACAGTGCATACACCGCCCAACCAACTCA
AGGATATGCACAGACCACCCAGCAGGCATATGGGCAGCAGAGTTATGGAACCTATGGACAGCCCACTGATGTCAGCTATA
CCCAGGCTCAGACCACTGCGACCTATGGGCAGACCGCCTATGCAACTTCTTATGGACAGCCTCCCGCTGGTTATACTACT
CCAACTGCCCCCCAGGCATACAGTCAGCCTGTCCAGGGGTACGGCACTGGTGCTTATGATACCACCACTGCTACGGTCAC
TACCACCCAGGCCTCCTATGCAGCTCAGTCTGCATATGGCACTCAGCCTGCTTACCCAGCCTATGGGCAGCAGCCAGCAG
CCACCGCACCTGCAAGACCACAGGATGGTAACAAACCCGCTGAGACTAGTCAACCTCAATCTAGCACAGGGGGTTACAAC
CAGCCCAGCCTAGGATATGGACAGAGTAACTACAGTTATCCCCAGGTACCTGGGAGCTACCCCATGCAGCCAGTCACAGC
ACCACCATCTTATCCTCCTACCAGGTTTAATAGCAGTTCTTTGAAGCTTTATCATTACTCAAGAAGCTACTCCTCTACAC
AGCCGACTAGTTATGATCAGAGCAGTTACTCTCAGCAGAACACCTATGGGCAGCCGAGCAGCTATGGACAGCAGAGTAGC
TATGGTCAACAAAGCAGCTATGGGCAGCAGCCGCCCACTAGTTATCCCCCCCAAACTGGATCCTACAGCCAGGCTCCAAG
TCAATATAGCCAACAGAGCAGCAGCTACGGGCAGCAGAGTTCATTCCGACAGGACCACCCCAGTAGCATGGGTGTTTATG
GGCAGGAGTCTGGAGGATTTTCCGGACCAGGAGAGAACCGGAGCATGAGTGGCCCTGATAACCGGGGCAGGGGAAGAGGG
GGATTTGATCGTGGAGGCATGAGCAGAGGTGGGCGGGGAGGAGGACGCGGTGGAATGGGCAGCGCTGGAGAGCGAGGTGG
CTTCAATAAGCCTGGTGGACCCATGGATGAAGGACCAGATCTTGATAAAGGCCCACCTGTAGATCCAGATGAAGACTCTG
ACAACAGTGCAATTTATGTGCAAGGCCTAAATGACAATGTGACTCTAGATGATCTGGCTGACTTCTTTAAGCAATGTGGA
GTTGTTAAGATGAACAAGAGAACCGGACAACCCATGATCCATATCTACTTGGACAAGGAAACAGGAAAGCCCAAAGGTGA
TGCTACAGTATCCTATGAAGACCCACCAACTGCCAAGGCTGCTGTGGAGTGGTTTGATGGGAAAGATTTTCAAGGAAGCA
AACTTAAGGTTTCTCTTGCTCGGAAGAAACCTCCAATGAACAGCATGCGGGGTGGTATGCCTCCCCGTGAGGGCAGAGGG
ATGCCACCGCCACTCCGTGGAGGTCCAGGGGGCCCAGGAGGTCCTGGGGGCCCCATGGGTCGCATGGGAGGCCGTGGAGG
AGACAGAGGTGGCTTTCCCCCAAGAGGACCCCGGGGTTCCCGAGGGAACCCATCTGGAGGAGGAAACGTCCAGCACCGAG
CTGGGGACTGGCAGTGCCCCAATCCGGGGTGTGGAAACCAGAACTTCGCCTGGAGAACAGAATGCAACCAGTGTAAGGCC
CCGAAGCCTGAAGGCTTCCTTCCACCACCCTTCCCGCCCCCGGGCGGTGACCGTGGCAGAGGTGGCCCTGGTGGCATGCG
GGGAGGAAGAGGTGGCCTCATGGACCGCGGTGGTCCCGGTGGGATGTTCAGAGGTGGCCGCGGTGGAGACAGAGGGGGCT
TCCGTGGTGGCCGGGGCATGGACCGAGGTGGCTTTGGCGGAGGAAGACGAGGCGGTCCTGGTGGGCCCCCTGGACCTTTG
ATGGAACAGATGGGAGGAAGAAGAGGCGGGCGTGGAGGACCTGGAAAAATGGATAAAGGCGAGCACCGTCAGGAGCGCAG
AGACCGGCCCTACTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 36 .04 RPM |
| SRP017611_kidney | 45 .24 RPM |
| SRP017611_liver | 33 .94 RPM |
| SRP012049_cerebellum | 77 .74 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000008298 | possible_ortholog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000019987 | ortholog_many2many | 4 retrogenes | |
| Cavia porcellus | ENSCPOG00000009502 | ortholog_one2many | 1 retrogene | |
| Felis catus | ENSFCAG00000004243 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000182944 | possible_ortholog | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000012212 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000008703 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000012058 | ortholog_one2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000008679 | possible_ortholog | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000013432 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000009079 | possible_ortholog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000004432 | possible_ortholog | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000011684 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000014218 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000023177 | possible_ortholog | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000011881 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_133 | 75.74 | 69.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_560 | 97.39 | 62.74 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_1142 | 96.67 | 62.59 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_1183 | 90.72 | 56.04 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cfam_1225 | 88.10 | 52.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cfam_1397 | 84.91 | 62.74 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cfam_1736 | 91.04 | 62.74 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cfam_1889 | 98.34 | 62.74 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000012160 retrocopies