RetrogeneDB ID: | retro_cjac_2911 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 7:87084911..87086060(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000021737 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000019987 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.73 % |
Parental protein coverage: | 57.79 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | QPPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNRGRGR |
QPPTSYPPQTGSY.Q.PSQYSQQSSSYGQQSSF.QDHPSSMGVYGQESGGFS.PGEN.SMSGPDN.GRGR | |
Retrocopy | QPPTSYPPQTGSYCQDPSQYSQQSSSYGQQSSFQQDHPSSMGVYGQESGGFSRPGENQSMSGPDNWGRGR |
Parental | GGFDRGGMSRGGRGGGRGGMG-AGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDNSAIYVQGLNDNVTL |
GGFDRGGMSRGG.GGGR.G.G.AGE.GGFNKPGGPMDEG.DLDLGPPVDPDEDSDN.AIYVQGLNDNVTL | |
Retrocopy | GGFDRGGMSRGGQGGGRSGIGSAGE*GGFNKPGGPMDEGADLDLGPPVDPDEDSDNNAIYVQGLNDNVTL |
Parental | DDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSL |
DDLADFFKQCGVVKMNKRTGQPMI.IYLDKETGK.KGDATVSYEDPPTAKAAVEWFD.KDFQGSKLKVSL | |
Retrocopy | DDLADFFKQCGVVKMNKRTGQPMIRIYLDKETGKSKGDATVSYEDPPTAKAAVEWFDSKDFQGSKLKVSL |
Parental | ARKKPPMNSMRGGMPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGN |
A.KKPP.NSMRGGMPPREGRGM.PPL.GG..GPG.PGGPMG.MGG.GGDRGGFPPRGP.GS.GNPS.G.N | |
Retrocopy | AQKKPPVNSMRGGMPPREGRGMSPPLCGGLEGPGCPGGPMGCMGGHGGDRGGFPPRGPWGSQGNPSRGRN |
Parental | VQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGP |
VQH.AGDWQCP.PGC.NQNFA.RTECNQCKAPKPE.FLPPPFPP..GD..RGGPGGMRGGR.GLMD.GGP | |
Retrocopy | VQHQAGDWQCPSPGC*NQNFA*RTECNQCKAPKPEAFLPPPFPPLDGDHVRGGPGGMRGGRSGLMDCGGP |
Parental | GGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGG |
GGMFRGGRGGDRGGFR.GRG....GFGGGR..G | |
Retrocopy | GGMFRGGRGGDRGGFRDGRGVN*SGFGGGR*NG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .02 RPM | 44 .73 RPM |
SRP051959_heart | 0 .04 RPM | 47 .04 RPM |
SRP051959_kidney | 0 .04 RPM | 57 .09 RPM |
SRP051959_liver | 0 .04 RPM | 43 .10 RPM |
SRP051959_lung | 0 .07 RPM | 71 .76 RPM |
SRP051959_lymph_node | 0 .05 RPM | 69 .72 RPM |
SRP051959_skeletal_muscle | 0 .04 RPM | 41 .91 RPM |
SRP051959_spleen | 0 .02 RPM | 60 .19 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008298 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000012160 | 8 retrocopies | |
Callithrix jacchus | ENSCJAG00000019987 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000009502 | 1 retrocopy | |
Felis catus | ENSFCAG00000004243 | 1 retrocopy | |
Homo sapiens | ENSG00000182944 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012212 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000008703 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012058 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008679 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013432 | 2 retrocopies | |
Mus musculus | ENSMUSG00000009079 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004432 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000011684 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014218 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023177 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011881 | 1 retrocopy |