RetrogeneDB ID: | retro_cjac_2022 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 21:7799120..7800382(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000008876 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000019987 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.6 % |
Parental protein coverage: | 70.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | PPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNRGRGRG |
P....PPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNRGRGRG | |
Retrocopy | PLVTHPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNRGRGRG |
Parental | GFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDNSAIYVQGLNDNVTLD |
GFD.GGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEG.DLDLGPPVDPD.DSD.SAIYVQGLNDNVTLD | |
Retrocopy | GFDSGGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEGADLDLGPPVDPDGDSDHSAIYVQGLNDNVTLD |
Parental | DLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA |
DL.DFFKQCG.VKMNKRTGQ.MIHI.LDKETGKPKGDATV.YEDPPTAKAAVEWFDGKDFQGSKLKVSLA | |
Retrocopy | DLTDFFKQCGLVKMNKRTGQSMIHICLDKETGKPKGDATVPYEDPPTAKAAVEWFDGKDFQGSKLKVSLA |
Parental | RKKPPMNSMRGGMPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNV |
.KKPPMNSMRGGMPPREGRGMPPPLRGGPGGPGGPGGPMGRM.GRGGDRGGFPPRGPRGSRGNPSG.GNV | |
Retrocopy | WKKPPMNSMRGGMPPREGRGMPPPLRGGPGGPGGPGGPMGRMRGRGGDRGGFPPRGPRGSRGNPSGEGNV |
Parental | QHRAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPG |
QHRAGD.QC.NPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRG.GGPGGMRGGR.GLMDRGGPG | |
Retrocopy | QHRAGDCQCTNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGGGGPGGMRGGRCGLMDRGGPG |
Parental | GMFRGGRGGDRGGFRGGR-GMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQERRDR |
GMFRGGRGGDRGGFRGGR.GMDR.GFGGGRRGGPGGPPGPLMEQMG.RRGGRGGPGKMD.G.HR.E.RDR | |
Retrocopy | GMFRGGRGGDRGGFRGGR<GMDRDGFGGGRRGGPGGPPGPLMEQMGERRGGRGGPGKMDEGDHRKECRDR |
Parental | PY |
PY | |
Retrocopy | PY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 44 .73 RPM |
SRP051959_heart | 0 .00 RPM | 47 .04 RPM |
SRP051959_kidney | 0 .04 RPM | 57 .09 RPM |
SRP051959_liver | 0 .00 RPM | 43 .10 RPM |
SRP051959_lung | 0 .03 RPM | 71 .76 RPM |
SRP051959_lymph_node | 0 .05 RPM | 69 .72 RPM |
SRP051959_skeletal_muscle | 0 .02 RPM | 41 .91 RPM |
SRP051959_spleen | 0 .00 RPM | 60 .19 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008298 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000012160 | 8 retrocopies | |
Callithrix jacchus | ENSCJAG00000019987 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000009502 | 1 retrocopy | |
Felis catus | ENSFCAG00000004243 | 1 retrocopy | |
Homo sapiens | ENSG00000182944 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012212 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000008703 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012058 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008679 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013432 | 2 retrocopies | |
Mus musculus | ENSMUSG00000009079 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004432 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000011684 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014218 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023177 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011881 | 1 retrocopy |