RetrogeneDB ID:

retro_mluc_328

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429768:23160274..23162185(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000027802
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000012058
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_328
ATGGCGTCCACGAATTACAGTACCTACAGCCAAGCTGCAGCCCAGCAGGGCTACAGTGCTTACACCACCCAGCCCACTCA
AGGATATGCACAGACCACGCAGGCATATGGGCAGCAAAGTTATGGAACCTATGGACAGCCCACTGATGTCAGCTATACCC
AGGCTCAGACCACTGCTACCTATGGGCAGACAGCCTATGTGACTTCTTATGGACAGCCTCCCACAGGTTATACTACTCCA
GCTGCCCCCCAGGCCTACAGTCAGCCTGTCCAGGGGTATGGCACTGGTGCTTATGATACCACCACTGCTACGGTCACTAC
CACCCAGGCCTCCTATGCAGCTCAGTCTGCGTATGGCACGCAGCCTGCTTACTCAGCCTATGGGCAACAGCCGGCAACCA
CTGCACCTGCGAGACCACAGGATGGTAACAAACCCGCTGAGACCAGTCAACCTCAATCCAGCACAGGGGGTTACAACCAG
CCCAGCCTGGGATATGGACAGAGTAACTACAGTTATCCCCAGGTACCTGGGAGCTACTCCATACAGCCAGTCACATCACC
ACCATCTTATCCTCCTACCAGCTATTCCTCTACACAGCCGACTAGTTATGATCAGAGCAGTTACTCTCAGCAGAACACCT
ATGGGCAGCCGAGTAGCTCTGGTCAACAAAGCAGCTATGGGCAGCAGCCGCCCACTAGTTACCACCCCCAAACTGGATCC
TACAGCCAGGCTCGAAGTCAATATAGCCAACAGAGCAGCAGCTACGGGCAGCAGAGTTCATTCCGACAGGACCACCCCAG
TAGCATGGGTGTTTATGGGCAGGAGTCTGGAGGATTTTCCAGACCAGGAGAGAATCAGAGCATGACTGGCCCTGATAACC
GGGGCAGGGGAAGAGGGGGATTTGATCGTGGAGGCATGAGCAGAGGTGGGCGGGGAGGAGGACGCGGTGGAATGGGCAGC
GCTGGAAAGCGAGGTGGCTTCAATAAGCCTGGTGAACCCATGGATGAAGGACCACCTGTTGATCCAGATGAAGACTCTGA
CAATAGTGCCATTTATGTGCAAGGTTTAAATGACAATGTGACTCTAGATGACCTGGCAGACTTCTTCAAGCAGTGTGGAG
TTGTTAAGATGAACAAGAGGACGGGCCAGCCCATGATCCACATCTACTTGGACAAGGAAACAGGGAAGCCCAAAGGCGAT
GCTACAGTGTCCTATGAAGACCCGCCGACGGCCAAGGCGGCCGTGGACTGGTTTGATGGGAAAGATTTTCAAGGAAGCAA
GCTGAAAGTTTCCCTTGCTCGGAAGAAGCCGCCAATGAACAGCATGCAGGGGGACATACCACCCCGAGAGGGCAGGGGGA
TGCCGCCGCCGCTCCGTGGAGGTCCGGGAGGCCCAGGAGGCCCCGGGGGACCCATGGGTCGCATGGGAGGCCATGGAGGA
GACAGAGGAGGCTTTCCCCCAAGAGGGCCCCGGGGCTCCCGAGGAAACCCATCCGGAGGAAACCTCCAGCACCGAGCTGG
AGACTGGCAGTGCCCCAATCCGGGGTGTGGAAACCGGAATTTCGCCTGGAGAACAGAATGCAACCGGTGTAAGGCCCCGA
AGCCTCAAGGCTTCCTCCCGCCACCCTTTCCACCCCAGGGCGGTGACCGTAGCAGAGGTGGCCCTGGTGGCATGAGGGGA
GGAAAAGGTGGCCTCATGGACCGCGGTGGTCCTGGTGGAATGTTCAGAGGTGGCTGTGGTGGAGACAGAGGTAGCTTCCG
CAGTGGCTTTGGTGGAGGAAGACGAGGTGGCCCTGGGGGTCCTCCTGGACCTTTGATGGAGCAGATGGGAGGAAGAAGAG
GCGGGCGTGGAGGACCTGGAAAGACGGATAAAGGTGAACACCGTCAGGAACGCAGAGACCGGCCCTACTAG

ORF - retro_mluc_328 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.0 %
Parental protein coverage: 99.39 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalDYSTYSQAAAQQGQFLHLISLTTQGYAQTTQQAYGQQSYGTYGQPTDVSYTQAQTTATYGQTAYATSYGQ
.YSTYSQAAAQQG.........TQGYAQTTQ.AYGQQSYGTYGQPTDVSYTQAQTTATYGQTAY.TSYGQ
RetrocopyNYSTYSQAAAQQGYSAYTTQ-PTQGYAQTTQ-AYGQQSYGTYGQPTDVSYTQAQTTATYGQTAYVTSYGQ
ParentalPPTGYTTPAAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYGTQPAYPAYGQQPATTAPARPQDG
PPTGYTTPAAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYGTQPAY.AYGQQPATTAPARPQDG
RetrocopyPPTGYTTPAAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYGTQPAYSAYGQQPATTAPARPQDG
ParentalNKPAETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSYPMQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQN
NKPAETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSY..QPVT.PPSYPPTSYSSTQPTSYDQSSYSQQN
RetrocopyNKPAETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSYSIQPVTSPPSYPPTSYSSTQPTSYDQSSYSQQN
ParentalTYGQPSSYGQQSSYGQQSSYGQQPPT-SYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQ-
TYGQPSS.GQQSSYGQQ......P.T.SY......YSQ..S.Y.QQSS......S.........G.....
RetrocopyTYGQPSSSGQQSSYGQQPPTSYHPQTGSYSQARSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSRP
Parental-ESGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLDLE
.E.....GP..NR...G....G..RGG..RGG..RGG...GRGGMGSAG.RGGFNKPG.PMDEGP..D..
RetrocopyGENQSMTGP-DNR---GRGRGGFDRGGMSRGG--RGG---GRGGMGSAGKRGGFNKPGEPMDEGPPVD--
ParentalGPPVDPDEDSDNSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE
.P..D.D.......IYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE
Retrocopy-PDEDSDNSA----IYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE
ParentalDPPTAKAAVDWFDGKDFQGSKLKVSLARKKPPMNSMRGGMPPREGRGMPPPLRGGPGGPGGPGGPMGRMG
DPPTAKAAVDWFDGKDFQGSKLKVSLARKKPPMNSM.G..PPREGRGMPPPLRGGPGGPGGPGGPMGRMG
RetrocopyDPPTAKAAVDWFDGKDFQGSKLKVSLARKKPPMNSMQGDIPPREGRGMPPPLRGGPGGPGGPGGPMGRMG
ParentalGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPP
G.GGDRGGFPPRGPRGSRGNPS.GGN.QHRAGDWQCPNPGCGN.NFAWRTECN.CKAPKP.GFLPPPFPP
RetrocopyGHGGDRGGFPPRGPRGSRGNPS-GGNLQHRAGDWQCPNPGCGNRNFAWRTECNRCKAPKPQGFLPPPFPP
ParentalPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQ
.GGDR.RGGPGGMRGG.GGLMDRGGPGGMFRGG.GGDRG.FR.G.G...GG..GG..G.PG....PLMEQ
RetrocopyQGGDRSRGGPGGMRGGKGGLMDRGGPGGMFRGGCGGDRGSFRSGFG---GGRRGGPGGPPG----PLMEQ
ParentalMGGRRGGRGGPGKMDKGEHRQERRDRPY
MGGRRGGRGGPGK.DKGEHRQERRDRPY
RetrocopyMGGRRGGRGGPGKTDKGEHRQERRDRPY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_328 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 18 parental genes, and 33 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000082982 retrocopies
retro_amel_191, retro_amel_959,
Canis familiaris ENSCAFG000000121608 retrocopies
retro_cfam_1142, retro_cfam_1183, retro_cfam_1225, retro_cfam_133, retro_cfam_1397, retro_cfam_1736, retro_cfam_1889, retro_cfam_560,
Callithrix jacchus ENSCJAG000000199874 retrocopies
retro_cjac_1716, retro_cjac_2022, retro_cjac_2813, retro_cjac_2911,
Cavia porcellus ENSCPOG000000095021 retrocopy
retro_cpor_1353,
Felis catus ENSFCAG000000042431 retrocopy
retro_fcat_519,
Homo sapiens ENSG000001829441 retrocopy
retro_hsap_463,
Gorilla gorilla ENSGGOG000000122121 retrocopy
retro_ggor_444,
Macropus eugenii ENSMEUG000000087031 retrocopy
retro_meug_1424,
Myotis lucifugus ENSMLUG000000048063 retrocopies
retro_mluc_1934, retro_mluc_608, retro_mluc_638,
Myotis lucifugus ENSMLUG00000012058 1 retrocopy
retro_mluc_328 ,
Monodelphis domestica ENSMODG000000086791 retrocopy
retro_mdom_279,
Mustela putorius furoENSMPUG000000134322 retrocopies
retro_mputfur_56, retro_mputfur_572,
Mus musculus ENSMUSG000000090791 retrocopy
retro_mmus_1379,
Oryctolagus cuniculus ENSOCUG000000044322 retrocopies
retro_ocun_1346, retro_ocun_242,
Pongo abelii ENSPPYG000000116841 retrocopy
retro_pabe_1769,
Pan troglodytes ENSPTRG000000142181 retrocopy
retro_ptro_350,
Ictidomys tridecemlineatus ENSSTOG000000231771 retrocopy
retro_itri_1892,
Tursiops truncatus ENSTTRG000000118811 retrocopy
retro_ttru_1366,


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