RetrogeneDB ID: retro_mluc_328

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429768:23160274..23162185(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000027802
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000012058
• Aliases: None
• Description: None

Sequence

>retro_mluc_328
ATGGCGTCCACGAATTACAGTACCTACAGCCAAGCTGCAGCCCAGCAGGGCTACAGTGCTTACACCACCCAGCCCACTCA
AGGATATGCACAGACCACGCAGGCATATGGGCAGCAAAGTTATGGAACCTATGGACAGCCCACTGATGTCAGCTATACCC
AGGCTCAGACCACTGCTACCTATGGGCAGACAGCCTATGTGACTTCTTATGGACAGCCTCCCACAGGTTATACTACTCCA
GCTGCCCCCCAGGCCTACAGTCAGCCTGTCCAGGGGTATGGCACTGGTGCTTATGATACCACCACTGCTACGGTCACTAC
CACCCAGGCCTCCTATGCAGCTCAGTCTGCGTATGGCACGCAGCCTGCTTACTCAGCCTATGGGCAACAGCCGGCAACCA
CTGCACCTGCGAGACCACAGGATGGTAACAAACCCGCTGAGACCAGTCAACCTCAATCCAGCACAGGGGGTTACAACCAG
CCCAGCCTGGGATATGGACAGAGTAACTACAGTTATCCCCAGGTACCTGGGAGCTACTCCATACAGCCAGTCACATCACC
ACCATCTTATCCTCCTACCAGCTATTCCTCTACACAGCCGACTAGTTATGATCAGAGCAGTTACTCTCAGCAGAACACCT
ATGGGCAGCCGAGTAGCTCTGGTCAACAAAGCAGCTATGGGCAGCAGCCGCCCACTAGTTACCACCCCCAAACTGGATCC
TACAGCCAGGCTCGAAGTCAATATAGCCAACAGAGCAGCAGCTACGGGCAGCAGAGTTCATTCCGACAGGACCACCCCAG
TAGCATGGGTGTTTATGGGCAGGAGTCTGGAGGATTTTCCAGACCAGGAGAGAATCAGAGCATGACTGGCCCTGATAACC
GGGGCAGGGGAAGAGGGGGATTTGATCGTGGAGGCATGAGCAGAGGTGGGCGGGGAGGAGGACGCGGTGGAATGGGCAGC
GCTGGAAAGCGAGGTGGCTTCAATAAGCCTGGTGAACCCATGGATGAAGGACCACCTGTTGATCCAGATGAAGACTCTGA
CAATAGTGCCATTTATGTGCAAGGTTTAAATGACAATGTGACTCTAGATGACCTGGCAGACTTCTTCAAGCAGTGTGGAG
TTGTTAAGATGAACAAGAGGACGGGCCAGCCCATGATCCACATCTACTTGGACAAGGAAACAGGGAAGCCCAAAGGCGAT
GCTACAGTGTCCTATGAAGACCCGCCGACGGCCAAGGCGGCCGTGGACTGGTTTGATGGGAAAGATTTTCAAGGAAGCAA
GCTGAAAGTTTCCCTTGCTCGGAAGAAGCCGCCAATGAACAGCATGCAGGGGGACATACCACCCCGAGAGGGCAGGGGGA
TGCCGCCGCCGCTCCGTGGAGGTCCGGGAGGCCCAGGAGGCCCCGGGGGACCCATGGGTCGCATGGGAGGCCATGGAGGA
GACAGAGGAGGCTTTCCCCCAAGAGGGCCCCGGGGCTCCCGAGGAAACCCATCCGGAGGAAACCTCCAGCACCGAGCTGG
AGACTGGCAGTGCCCCAATCCGGGGTGTGGAAACCGGAATTTCGCCTGGAGAACAGAATGCAACCGGTGTAAGGCCCCGA
AGCCTCAAGGCTTCCTCCCGCCACCCTTTCCACCCCAGGGCGGTGACCGTAGCAGAGGTGGCCCTGGTGGCATGAGGGGA
GGAAAAGGTGGCCTCATGGACCGCGGTGGTCCTGGTGGAATGTTCAGAGGTGGCTGTGGTGGAGACAGAGGTAGCTTCCG
CAGTGGCTTTGGTGGAGGAAGACGAGGTGGCCCTGGGGGTCCTCCTGGACCTTTGATGGAGCAGATGGGAGGAAGAAGAG
GCGGGCGTGGAGGACCTGGAAAGACGGATAAAGGTGAACACCGTCAGGAACGCAGAGACCGGCCCTACTAG

Alignment

ORF - retro_mluc_328 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81. %
• Parental protein coverage: 99.39 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DYSTYSQAAAQQGQFLHLISLTTQGYAQTTQQAYGQQSYGTYGQPTDVSYTQAQTTATYGQTAYATSYGQ
          .YSTYSQAAAQQG.........TQGYAQTTQ.AYGQQSYGTYGQPTDVSYTQAQTTATYGQTAY.TSYGQ
Retrocopy NYSTYSQAAAQQGYSAYTTQ-PTQGYAQTTQ-AYGQQSYGTYGQPTDVSYTQAQTTATYGQTAYVTSYGQ

Parental  PPTGYTTPAAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYGTQPAYPAYGQQPATTAPARPQDG
          PPTGYTTPAAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYGTQPAY.AYGQQPATTAPARPQDG
Retrocopy PPTGYTTPAAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYGTQPAYSAYGQQPATTAPARPQDG

Parental  NKPAETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSYPMQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQN
          NKPAETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSY..QPVT.PPSYPPTSYSSTQPTSYDQSSYSQQN
Retrocopy NKPAETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSYSIQPVTSPPSYPPTSYSSTQPTSYDQSSYSQQN

Parental  TYGQPSSYGQQSSYGQQSSYGQQPPT-SYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQ-
          TYGQPSS.GQQSSYGQQ......P.T.SY......YSQ..S.Y.QQSS......S.........G.....
Retrocopy TYGQPSSSGQQSSYGQQPPTSYHPQTGSYSQARSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSRP

Parental  -ESGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLDLE
          .E.....GP..NR...G....G..RGG..RGG..RGG...GRGGMGSAG.RGGFNKPG.PMDEGP..D..
Retrocopy GENQSMTGP-DNR---GRGRGGFDRGGMSRGG--RGG---GRGGMGSAGKRGGFNKPGEPMDEGPPVD--

Parental  GPPVDPDEDSDNSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE
          .P..D.D.......IYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE
Retrocopy -PDEDSDNSA----IYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE

Parental  DPPTAKAAVDWFDGKDFQGSKLKVSLARKKPPMNSMRGGMPPREGRGMPPPLRGGPGGPGGPGGPMGRMG
          DPPTAKAAVDWFDGKDFQGSKLKVSLARKKPPMNSM.G..PPREGRGMPPPLRGGPGGPGGPGGPMGRMG
Retrocopy DPPTAKAAVDWFDGKDFQGSKLKVSLARKKPPMNSMQGDIPPREGRGMPPPLRGGPGGPGGPGGPMGRMG

Parental  GRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPP
          G.GGDRGGFPPRGPRGSRGNPS.GGN.QHRAGDWQCPNPGCGN.NFAWRTECN.CKAPKP.GFLPPPFPP
Retrocopy GHGGDRGGFPPRGPRGSRGNPS-GGNLQHRAGDWQCPNPGCGNRNFAWRTECNRCKAPKPQGFLPPPFPP

Parental  PGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQ
          .GGDR.RGGPGGMRGG.GGLMDRGGPGGMFRGG.GGDRG.FR.G.G...GG..GG..G.PG....PLMEQ
Retrocopy QGGDRSRGGPGGMRGGKGGLMDRGGPGGMFRGGCGGDRGSFRSGFG---GGRRGGPGGPPG----PLMEQ

Parental  MGGRRGGRGGPGKMDKGEHRQERRDRPY
          MGGRRGGRGGPGK.DKGEHRQERRDRPY
Retrocopy MGGRRGGRGGPGKTDKGEHRQERRDRPY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_328 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 18 parental genes, and 33 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000008298	2 retrocopies	retro_amel_191, retro_amel_959,
Canis familiaris	ENSCAFG00000012160	8 retrocopies	retro_cfam_1142, retro_cfam_1183, retro_cfam_1225, retro_cfam_133, retro_cfam_1397, retro_cfam_1736, retro_cfam_1889, retro_cfam_560,
Callithrix jacchus	ENSCJAG00000019987	4 retrocopies	retro_cjac_1716, retro_cjac_2022, retro_cjac_2813, retro_cjac_2911,
Cavia porcellus	ENSCPOG00000009502	1 retrocopy	retro_cpor_1353,
Felis catus	ENSFCAG00000004243	1 retrocopy	retro_fcat_519,
Homo sapiens	ENSG00000182944	1 retrocopy	retro_hsap_463,
Gorilla gorilla	ENSGGOG00000012212	1 retrocopy	retro_ggor_444,
Macropus eugenii	ENSMEUG00000008703	1 retrocopy	retro_meug_1424,
Myotis lucifugus	ENSMLUG00000004806	3 retrocopies	retro_mluc_1934, retro_mluc_608, retro_mluc_638,
Myotis lucifugus	ENSMLUG00000012058	1 retrocopy	retro_mluc_328 ,
Monodelphis domestica	ENSMODG00000008679	1 retrocopy	retro_mdom_279,
Mustela putorius furo	ENSMPUG00000013432	2 retrocopies	retro_mputfur_56, retro_mputfur_572,
Mus musculus	ENSMUSG00000009079	1 retrocopy	retro_mmus_1379,
Oryctolagus cuniculus	ENSOCUG00000004432	2 retrocopies	retro_ocun_1346, retro_ocun_242,
Pongo abelii	ENSPPYG00000011684	1 retrocopy	retro_pabe_1769,
Pan troglodytes	ENSPTRG00000014218	1 retrocopy	retro_ptro_350,
Ictidomys tridecemlineatus	ENSSTOG00000023177	1 retrocopy	retro_itri_1892,
Tursiops truncatus	ENSTTRG00000011881	1 retrocopy	retro_ttru_1366,