RetrogeneDB ID: retro_mputfur_572

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896921.1:14247948..14249183(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EWSR1
• Ensembl ID: ENSMPUG00000013432
• Aliases: None
• Description: EWS RNA-binding protein 1 [Source:HGNC Symbol;Acc:3508]

Sequence

>retro_mputfur_572
ATGGTGTCTACAGATTACATCACTCACAGTCAAGCTGCAGCCCAATAGGGCTACAGTGCATACACCACTCAGCCCACTCA
AAGATATGCACAGACCACCCAGGCATATAGGCAGCAAAGTTATGGAACCTATGACAGCCCACTGATGTCAGCTATACCCA
GGCTCAGATCACTGCAACTGACAGGCAGACCACCTATGCAACTTTTTATGGAACAGCTTCCCACTAGTTATACTACTCCA
TCTGCCCACCTCTACCTGCCCCATGTGTAAAGTCATTTTGTCCAAGTGGACAGCAATGGTGTAAATGATACCACCACTGC
TATGGTCACGAACACCCAGGCCTCCTATACAGCTCAGTCTGCATATGGCACTTGACCTACTTATCCAGTCTATGGGCAGC
AGCCAATAGCCACTGAACCTGCAAGACCACAGGATGGTAACAAGTCTGCTGAGACTAGTCAACCTCATTCTAGCACAGGA
GGTTACAACTAGCCCAACCTAGGATATGGACAGAATAACTATAGTTATCCCCAGGTACCTGGGAGCTACCCCATGCAGCC
AGTCACAGCACCATCATCTTCTCCTACCAGCTATTCCTCTGCACAGCCAACTAGGTATGATCAAAACCGTTACTCTCAGC
GGAACACCTATGCGTAGCCCACCAGCTATGGACAGCAGAGTAGCTATGGTCAACAAAGTGGCTATGGGAAGCAGCCACCC
ACCAGTTATCCCCACCAAACTGGATCCTACAGCCAGACTTTAAGTCAATAGAGCCAACAGAGCAGCAGCTATAGGCAGCA
GAGTTCATTCTGACAGGACCACCCCAGTAGCATGGATGTTTACAGGCAGGATTCTGGAGGATTTTCCAGATAGGAGAGAA
TGGAACATGAGTGAGCCTGATAACTGGGGCAGGGAAGAGGGGTATTTGATAGGTGGAAGCATGAACAGAGGGGGGTAGGG
AGAAGGATGCAGTGGAATGGGCTCTGGAGAGCAAGGTGGCTTCAATAAGCCTGGTGAACCCACGGTCAAAGGACCAGATC
TTGATCTAGGCCCATCTGTAGATCCAGATGAAGACTCTGACAATGTGCAATTTATGTGCAAAGCTTAAATGACAATGTGA
TTCCAAATGATCTAGCAGACTTCATTAAGCAGTGTGGAGTTGTTAAGAGAACAAGAGAACTGGACAATCCATGACCCACA
GCTACTTGGGCAAGGAAACAGAAGAGCCCAAAGGT

Alignment

ORF - retro_mputfur_572 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.99 %
• Parental protein coverage: 62.71 %
• Number of stop codons detected: 8
• Number of frameshifts detected: 8

Retrocopy - Parental Gene Alignment:

Parental  MASTDYSTYSQAAAQQGYSAYTAQPTQGYAQTTQQAYGQQSYGTYG-QPTDVSYTQAQTTATYGQTAYAT
          M.STDY.T.SQAAAQ.GYSAYT.QPTQ.YAQTTQ.AY.QQSYGTY..QPTDVSYTQAQ.TAT..QT.YAT
Retrocopy MVSTDYITHSQAAAQ*GYSAYTTQPTQRYAQTTQ-AYRQQSYGTYD<QPTDVSYTQAQITATDRQTTYAT

Parental  SYG-QPPAGYTTPTA----PQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYGTQPAYPAYGQQPAA
          .YG.Q.P..YTTP.A....P...S..VQ....G..DTTTA.VT.TQASY.AQSAYGT.P.YP.YGQQP.A
Retrocopy FYG>QLPTSYTTPSAHLYLPHV*SHFVQVDSNGVNDTTTAMVTNTQASYTAQSAYGT*PTYPVYGQQPIA

Parental  TAPARPQDGNKPAETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSYPMQPVTAPPSYPPTSYSSTQPTSY
          T.PARPQDGNK.AETSQP.SSTGGYN.P.LGYGQ.NYSYPQVPGSYPMQPVTAP.S..PTSYSS.QPT.Y
Retrocopy TEPARPQDGNKSAETSQPHSSTGGYN*PNLGYGQNNYSYPQVPGSYPMQPVTAPSS-SPTSYSSAQPTRY

Parental  DQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPS
          DQ..YSQ.NTY..P.................QPPTSYP.QTGSYSQ..SQ.SQQSSSY.QQSSF.QDHPS
Retrocopy DQNRYSQRNTYA*PTXXXXXXXXXXXXXXXKQPPTSYPHQTGSYSQTLSQ*SQQSSSYRQQSSF*QDHPS

Parental  SMGVYGQESGGFS-GPGENR-SMSGPDNRGR-GRGGFDR-GGMSRGGRGGGRGGMGSAGERGGFNKPGGP
          SM.VY.Q.SGGFS...GEN...MS.PDN.GR.GRG.FDR.G.M.RGG.G.G..GMGS.GE.GGFNKPG.P
Retrocopy SMDVYRQDSGGFS<QIGENG<NMSEPDNWGR<GRGVFDR>GSMNRGG*GEGCSGMGS-GEQGGFNKPGEP

Parental  MDEGPDLDLGPPVDPDEDSDN-SAIYVQGLNDNVTLDDLADFFKQCGVVKM-NKRTGQPMIHIYLDKETG
          ...GPDLDLGP.VDPDEDSDN..AIYVQ.LNDNV...DLADF.KQCGVVK..NKRTGQ.M.H.YL.KET.
Retrocopy TVKGPDLDLGPSVDPDEDSDN<CAIYVQSLNDNVIPNDLADFIKQCGVVKR<NKRTGQSMTHSYLGKETE

Parental  KPKG
          .PKG
Retrocopy EPKG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_572 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_572 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 23 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000012160	8 retrocopies	retro_cfam_1142, retro_cfam_1183, retro_cfam_1225, retro_cfam_133, retro_cfam_1397, retro_cfam_1736, retro_cfam_1889, retro_cfam_560,
Callithrix jacchus	ENSCJAG00000019987	4 retrocopies	retro_cjac_1716, retro_cjac_2022, retro_cjac_2813, retro_cjac_2911,
Cavia porcellus	ENSCPOG00000009502	1 retrocopy	retro_cpor_1353,
Felis catus	ENSFCAG00000004243	1 retrocopy	retro_fcat_519,
Macropus eugenii	ENSMEUG00000008703	1 retrocopy	retro_meug_1424,
Myotis lucifugus	ENSMLUG00000012058	1 retrocopy	retro_mluc_328,
Monodelphis domestica	ENSMODG00000008679	1 retrocopy	retro_mdom_279,
Mustela putorius furo	ENSMPUG00000013432	2 retrocopies	retro_mputfur_56, retro_mputfur_572 ,
Mus musculus	ENSMUSG00000009079	1 retrocopy	retro_mmus_1379,
Oryctolagus cuniculus	ENSOCUG00000004432	2 retrocopies	retro_ocun_1346, retro_ocun_242,
Ictidomys tridecemlineatus	ENSSTOG00000023177	1 retrocopy	retro_itri_1892,