RetrogeneDB ID: | retro_dnov_1617 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_247766:703..1025(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1A | ||
Ensembl ID: | ENSDNOG00000007809 | ||
Aliases: | None | ||
Description: | RAP1A, member of RAS oncogene family [Source:HGNC Symbol;Acc:9855] |
Percent Identity: | 75.45 % |
Parental protein coverage: | 59.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | QGFALV-YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFL |
.GF.LV.YSIT..S.FNDLQ..REQIL....T.D.PM.L.GNKCDLEDE..VGKEQ.QNL...W..CAFL | |
Retrocopy | EGFVLV>YSITVHSIFNDLQEMREQILKFENTDDAPMTLIGNKCDLEDEQIVGKEQDQNL-*EWYICAFL |
Parental | ESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKSCLLL |
ESSAKS.INVNEIFYDLVRQINRKTPVE.KKP.KKSCLLL | |
Retrocopy | ESSAKSNINVNEIFYDLVRQINRKTPVE-KKPEKKSCLLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 17 .50 RPM |
SRP012922_cerebellum | 0 .00 RPM | 11 .41 RPM |
SRP012922_heart | 0 .00 RPM | 9 .05 RPM |
SRP012922_kidney | 0 .00 RPM | 11 .50 RPM |
SRP012922_liver | 0 .15 RPM | 5 .11 RPM |
SRP012922_lung | 0 .00 RPM | 20 .47 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 11 .77 RPM |
SRP012922_spleen | 0 .00 RPM | 22 .55 RPM |