Parental gene:

RPS14, ENSOPRG00000008422

Aliases:None
Description:ribosomal protein S14 [Source:HGNC Symbol;Acc:10387]
Organism:Southern American pika (Ochotona princeps)
Coordinates:GeneScaffold_5436:502724..504601(-)


>ENSOPRG00000008422
ATGGCACCTCGCAAGGGGAAGGAGAAGAAGGAGGAGCAGGTCATCAGCCTCGGGCCTCAGGTGGCCGAAGGGGAGAATGT
CTTTGGGGTCTGCCACATCTTTGCGTCCTTCAATGACACCTTTGTCCACGTCACTGATCTTTCTGGCAAGGAAACCATCT
GCCGCGTGACTGGTGGAATGAAGGTGAAGGCTGATCGAGATGAATCCTCGCCATATGCTGCCATGTTGGCTGCCCAGGAT
GTGGCCCAGAGGTGCAAAGAGCTGGGCATCACTGCCCTACACCTCAAACTGCGTGCCACAGGAGGAAATAGGACCAAAAC
CCCTGGACCTGGAGCCCAGTCAGCTCTCAGAGCCCTTGCCCGCTCGGGGATGAAAATTGGGCGAATTGAGGATGTCACCC
CCATCCCCTCCGACAGCACCCGCAGGAAGGGGGGTCGCCGTGGTCGCCGCCTGTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004644 possible_ortholog 2 retrogenes
retro_amel_1390, retro_amel_524,
Bos taurus ENSBTAG00000008570 possible_ortholog 2 retrogenes
retro_btau_1109, retro_btau_213,
Canis familiaris ENSCAFG00000018094 possible_ortholog 2 retrogenes
retro_cfam_1589, retro_cfam_301,
Callithrix jacchus ENSCJAG00000020981 possible_ortholog 1 retrogene
retro_cjac_89,
Equus caballus ENSECAG00000024336 ortholog_one2one 3 retrogenes
retro_ecab_127, retro_ecab_282, retro_ecab_522,
Latimeria chalumnae ENSLACG00000016164 possible_ortholog 1 retrogene
retro_lcha_12,
Loxodonta africana ENSLAFG00000031195 possible_ortholog 2 retrogenes
retro_lafr_235, retro_lafr_67,
Myotis lucifugus ENSMLUG00000013279 possible_ortholog 4 retrogenes
retro_mluc_1837, retro_mluc_205, retro_mluc_2464, retro_mluc_2485,
Macaca mulatta ENSMMUG00000002848 possible_ortholog 5 retrogenes
retro_mmul_1921, retro_mmul_1983, retro_mmul_358, retro_mmul_570, retro_mmul_90,
Mustela putorius furo ENSMPUG00000013776 possible_ortholog 1 retrogene
retro_mputfur_127,
Nomascus leucogenys ENSNLEG00000010366 possible_ortholog 1 retrogene
retro_nleu_101,
Oryctolagus cuniculus ENSOCUG00000011509 ortholog_one2one 1 retrogene
retro_ocun_128,
Otolemur garnettii ENSOGAG00000000721 possible_ortholog 1 retrogene
retro_ogar_286,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_28 90.62 62.91
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2. retro_opri_114 72.41 75.50
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3. retro_opri_194 94.04 100.00
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4. retro_opri_258 87.42 100.00
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5. retro_opri_268 76.72 74.83
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6. retro_opri_306 91.45 100.00
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7. retro_opri_376 75.45 72.19
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8. retro_opri_428 79.85 88.74
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9. retro_opri_707 82.67 99.34
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10. retro_opri_825 76.72 74.83
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11. retro_opri_842 89.55 88.74
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12. retro_opri_876 91.45 100.00
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13. retro_opri_882 52.99 76.82
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14. retro_opri_919 90.62 62.91
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15. retro_opri_971 94.04 100.00
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16. retro_opri_1012 72.41 75.50
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17. retro_opri_1074 87.42 100.00
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Download FASTA sequences of all ENSOPRG00000008422 retrocopies