RetrogeneDB ID: | retro_mmul_358 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:22257962..22258272(+) | ||
Located in intron of: | ENSMMUG00000005855 | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000003234 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4224 | ||
Ensembl ID: | ENSMMUG00000002848 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S14 [Source:RefSeq peptide;Acc:NP_001253845] |
Percent Identity: | 76.92 % |
Parental protein coverage: | 59.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | DRDESSP--YAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDV |
D..ES.P....AMLA.QDVAQRCKELGI.ALHI.LRATGGNRTKT.GPGAQ.ALRAL..SGMKI.RIED. | |
Retrocopy | DEGESRPR*ILAMLATQDVAQRCKELGIIALHIQLRATGGNRTKTLGPGAQLALRALVCSGMKIRRIEDA |
Parental | T-PIPSDS-TRRGVAVVAVCEQDSSKYFLLINCL |
T.P.P....T..GVAVVAVCEQDSSKYFLLINCL | |
Retrocopy | T>PSPLTALTGMGVAVVAVCEQDSSKYFLLINCL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 100 .62 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 190 .07 RPM |
SRP007412_cerebellum | 0 .19 RPM | 110 .29 RPM |
SRP007412_heart | 0 .12 RPM | 250 .20 RPM |
SRP007412_kidney | 0 .35 RPM | 237 .32 RPM |
SRP007412_liver | 0 .04 RPM | 341 .77 RPM |
SRP007412_testis | 0 .04 RPM | 157 .67 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_119 |
Pan troglodytes | retro_ptro_130 |
Gorilla gorilla | retro_ggor_222 |
Pongo abelii | retro_pabe_494 |