RetrogeneDB ID: | retro_btau_213 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 17:51707867..51708350(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000020532 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS14 | ||
Ensembl ID: | ENSBTAG00000008570 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S14 [Source:RefSeq peptide;Acc:NP_001071298] |
Percent Identity: | 92.25 % |
Parental protein coverage: | 82.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESS |
MAPRKGKEKKEE.VISLGPQVAEGENVFGVCHIFA.FNDTFVHVTDLSGKETICRVTGGMKVKADRDESS | |
Retrocopy | MAPRKGKEKKEERVISLGPQVAEGENVFGVCHIFAAFNDTFVHVTDLSGKETICRVTGGMKVKADRDESS |
Parental | PYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRI |
PYAA.LAAQDV.QR.KELG.TALHIKL.A.GGNRTKTPGPGAQSALRAL..SGMKIGRI | |
Retrocopy | PYAAVLAAQDVDQRGKELGMTALHIKLQARGGNRTKTPGPGAQSALRALDCSGMKIGRI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .14 RPM | 325 .22 RPM |
ERP005899_muscle | 0 .26 RPM | 890 .55 RPM |
SRP017611_brain | 0 .27 RPM | 103 .01 RPM |
SRP017611_kidney | 0 .18 RPM | 249 .83 RPM |
SRP017611_liver | 0 .30 RPM | 185 .00 RPM |
SRP030211_testis | 0 .02 RPM | 130 .36 RPM |