RetrogeneDB ID: | retro_btau_1109 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 26:3100235..3100663(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS14 | ||
Ensembl ID: | ENSBTAG00000008570 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S14 [Source:RefSeq peptide;Acc:NP_001071298] |
Percent Identity: | 54.48 % |
Parental protein coverage: | 91.72 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESS |
MA..K..EKK.EQVIS..P.VA..ENVFGVCHIFA.FNDTF.H.T.LSG.E.IC.V..G...K.D..ES. | |
Retrocopy | MASHKKEEKKKEQVISFRPWVAK*ENVFGVCHIFATFNDTFIHMTALSGQEIICQVSRGITFKSDKNESF |
Parental | PYAAMLAA-QDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIGNTKCHSALR |
P.A.MLA......Q.CKELG.T.L.IKL......RTK.P.P....AL.AL..SGMK....G...CH.... | |
Retrocopy | PHANMLAT<LSMVQSCKELGNTVLNIKLWVIIASRTKNP*PVTHLALGALDHSGMKMDQAG-*ECHLRSF |
Parental | SVMLK |
S..LK | |
Retrocopy | SQYLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 325 .22 RPM |
ERP005899_muscle | 0 .00 RPM | 890 .55 RPM |
SRP017611_brain | 0 .00 RPM | 103 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 249 .83 RPM |
SRP017611_liver | 0 .00 RPM | 185 .00 RPM |
SRP030211_testis | 0 .00 RPM | 130 .36 RPM |