RetrogeneDB ID: | retro_mmul_570 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:192304919..192305367(-) | ||
Located in intron of: | ENSMMUG00000021073 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4224 | ||
Ensembl ID: | ENSMMUG00000002848 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S14 [Source:RefSeq peptide;Acc:NP_001253845] |
Percent Identity: | 82.24 % |
Parental protein coverage: | 87.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | PQVAEGE-NVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKE |
PQVAEGE.NVFGVCHIFA.F.DTFVHVTDLSGKETIC.VTGGMKVKADRDESSP.AAMLAAQDV.QRCKE | |
Retrocopy | PQVAEGE>NVFGVCHIFATFSDTFVHVTDLSGKETICYVTGGMKVKADRDESSPCAAMLAAQDVSQRCKE |
Parental | LGITALHIKLRATGGNRTKTPGPGA-QSALRALARSGMKIGRIEDVT-PIPSDSTRR-GVAVVAVCEQDS |
LGI.ALHIKL.ATGGN.TKTPGPGA.QSA.RALA..GMKIGRIEDVT.P.P.......GVA.V.VCEQDS | |
Retrocopy | LGIAALHIKLWATGGNTTKTPGPGA<QSAFRALAHLGMKIGRIEDVT>PSPLTAPMESGVAMVTVCEQDS |
Parental | SKYFLLINCLRV |
S.YFLLI.C.RV | |
Retrocopy | SNYFLLIICHRV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 100 .62 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 190 .07 RPM |
SRP007412_cerebellum | 0 .06 RPM | 110 .29 RPM |
SRP007412_heart | 0 .35 RPM | 250 .20 RPM |
SRP007412_kidney | 0 .12 RPM | 237 .32 RPM |
SRP007412_liver | 0 .00 RPM | 341 .77 RPM |
SRP007412_testis | 0 .00 RPM | 157 .67 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_268 |
Pan troglodytes | retro_ptro_224 |
Gorilla gorilla | retro_ggor_316 |
Pongo abelii | retro_pabe_401 |