Parental gene:

ENSLACG00000016164

Aliases:None
Description:None
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH126585.1:1473417..1482381(-)


>ENSLACG00000016164
TCAAACCTGAAAGGCAGCCGCATCTGCCCCACGGAAATGGCTCCTCGTAAGGGTAAGGAAAAGAAGGAAGAACAGGTGAT
CAGCCTTGGTCCTCAGGTTGCAGAGGGAGAAAACGTTTTCGGAGTCTGCCACATCTTTGCTTCCTTCAATGACACCTTTG
TCCACGTTACAGATCTGTCTGGCAAGGAGACCATCTGCCGTGTGACCGGCGGTATGAAGGTGAAGGCCGACAGAGATGAA
TCCTCCCCCTATGCTGCCATGTTGGCGGCCCAGGACGTTGCCCAGAGGTGCAAGGAGCTGGGCATCACTGCTCTCCACAT
CAAGCTGCGTGCCACTGGGGGGAACAGAACCAAGACCCCTGGACCCGGTGCACAGTCTGCCCTTAGAGCTCTCGCCCGTT
CTGGCATGAAAATTGGGCGCATTGAGGACGTCACCCCCATTCCATCTGACAGCACTCGCAGAAAGGGCGGGCGCCGTGGT
CGTCGGCTGTAA

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 1096 .78 RPM
DRP000627_kidney 751 .04 RPM
DRP000627_pelvic_fin 1296 .99 RPM
DRP000627_pharynx 371 .31 RPM
DRP000627_gill 678 .98 RPM
DRP000627_tail_muscle 261 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015004 possible_ortholog 1 retrogene
retro_acar_201,
Ailuropoda melanoleuca ENSAMEG00000004644 possible_ortholog 2 retrogenes
retro_amel_1390, retro_amel_524,
Bos taurus ENSBTAG00000008570 possible_ortholog 2 retrogenes
retro_btau_1109, retro_btau_213,
Canis familiaris ENSCAFG00000018094 possible_ortholog 2 retrogenes
retro_cfam_1589, retro_cfam_301,
Callithrix jacchus ENSCJAG00000020981 possible_ortholog 1 retrogene
retro_cjac_89,
Cavia porcellus ENSCPOG00000024408 possible_ortholog 2 retrogenes
retro_cpor_253, retro_cpor_284,
Dipodomys ordii ENSDORG00000007146 possible_ortholog 2 retrogenes
retro_dord_174, retro_dord_330,
Equus caballus ENSECAG00000024336 possible_ortholog 3 retrogenes
retro_ecab_127, retro_ecab_282, retro_ecab_522,
Erinaceus europaeus ENSEEUG00000010462 possible_ortholog 3 retrogenes
retro_eeur_330, retro_eeur_423, retro_eeur_617,
Echinops telfairi ENSETEG00000002899 possible_ortholog 6 retrogenes
retro_etel_1270, retro_etel_1358, retro_etel_1851, retro_etel_1995, retro_etel_293, retro_etel_967,
Felis catus ENSFCAG00000011085 possible_ortholog 5 retrogenes
retro_fcat_1140, retro_fcat_622, retro_fcat_670, retro_fcat_857, retro_fcat_925,
Homo sapiens ENSG00000164587 possible_ortholog 8 retrogenes
retro_hsap_119, retro_hsap_1622, retro_hsap_268, retro_hsap_3001, retro_hsap_3113, retro_hsap_3232, retro_hsap_3495, retro_hsap_3789,
Gorilla gorilla ENSGGOG00000024593 ortholog_one2many 8 retrogenes
retro_ggor_1225, retro_ggor_2080, retro_ggor_2135, retro_ggor_2199, retro_ggor_222, retro_ggor_2362, retro_ggor_2548, retro_ggor_316,
Loxodonta africana ENSLAFG00000031195 possible_ortholog 2 retrogenes
retro_lafr_235, retro_lafr_67,
Macropus eugenii ENSMEUG00000014907 possible_ortholog 1 retrogene
retro_meug_619,
Microcebus murinus ENSMICG00000002900 possible_ortholog 2 retrogenes
retro_mmur_1569, retro_mmur_433,
Myotis lucifugus ENSMLUG00000013279 possible_ortholog 4 retrogenes
retro_mluc_1837, retro_mluc_205, retro_mluc_2464, retro_mluc_2485,
Macaca mulatta ENSMMUG00000002848 possible_ortholog 5 retrogenes
retro_mmul_1921, retro_mmul_1983, retro_mmul_358, retro_mmul_570, retro_mmul_90,
Mustela putorius furo ENSMPUG00000013776 possible_ortholog 1 retrogene
retro_mputfur_127,
Mus musculus ENSMUSG00000024608 possible_ortholog 5 retrogenes
retro_mmus_1362, retro_mmus_1924, retro_mmus_2178, retro_mmus_2252, retro_mmus_2380,
Nomascus leucogenys ENSNLEG00000010366 possible_ortholog 1 retrogene
retro_nleu_101,
Oryctolagus cuniculus ENSOCUG00000011509 possible_ortholog 1 retrogene
retro_ocun_128,
Otolemur garnettii ENSOGAG00000000721 possible_ortholog 1 retrogene
retro_ogar_286,
Ochotona princeps ENSOPRG00000008422 possible_ortholog 17 retrogenes
retro_opri_1012, retro_opri_1074, retro_opri_114, retro_opri_194, retro_opri_258, retro_opri_268, retro_opri_28, retro_opri_306, retro_opri_376, retro_opri_428, retro_opri_707, retro_opri_825, retro_opri_842, retro_opri_876, retro_opri_882, retro_opri_919, retro_opri_971,
Procavia capensis ENSPCAG00000015960 possible_ortholog 3 retrogenes
retro_pcap_198, retro_pcap_443, retro_pcap_73,
Pongo abelii ENSPPYG00000015950 possible_ortholog 7 retrogenes
retro_pabe_1340, retro_pabe_2487, retro_pabe_2571, retro_pabe_2888, retro_pabe_3204, retro_pabe_401, retro_pabe_494,
Pelodiscus sinensis ENSPSIG00000005922 ortholog_one2one 1 retrogene
retro_psin_33,
Pan troglodytes ENSPTRG00000017418 possible_ortholog 8 retrogenes
retro_ptro_1086, retro_ptro_130, retro_ptro_2030, retro_ptro_2104, retro_ptro_2184, retro_ptro_224, retro_ptro_2367, retro_ptro_2570,
Rattus norvegicus ENSRNOG00000018774 possible_ortholog 10 retrogenes
retro_rnor_1313, retro_rnor_1467, retro_rnor_1532, retro_rnor_1759, retro_rnor_1875, retro_rnor_1918, retro_rnor_2181, retro_rnor_228, retro_rnor_2728, retro_rnor_873,
Sorex araneus ENSSARG00000014249 possible_ortholog 1 retrogene
retro_sara_537,
Sarcophilus harrisii ENSSHAG00000018052 possible_ortholog 3 retrogenes
retro_shar_380, retro_shar_381, retro_shar_503,
Tupaia belangeri ENSTBEG00000006368 possible_ortholog 10 retrogenes
retro_tbel_1147, retro_tbel_1332, retro_tbel_1603, retro_tbel_1868, retro_tbel_202, retro_tbel_3517, retro_tbel_3619, retro_tbel_416, retro_tbel_519, retro_tbel_740,
Tursiops truncatus ENSTTRG00000013035 possible_ortholog 1 retrogene
retro_ttru_566,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_12 77.46 87.12
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Download FASTA sequences of all ENSLACG00000016164 retrocopies