RetrogeneDB ID: | retro_lafr_235 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_10:62640918..62641360(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSLAFG00000032257 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS14 | ||
Ensembl ID: | ENSLAFG00000031195 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.97 % |
Parental protein coverage: | 98.66 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | PRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPY |
P.....K..E...S..P....GENV..VC...A.F.D.FVHVTDLS.KET.CRVTGGM.VKAD.DE..P. | |
Retrocopy | PDTSQGKGKEGRASRQPWTSKGENVSSVCLVSAPFSDSFVHVTDLSDKETVCRVTGGMEVKADPDERPPH |
Parental | AAMLAAQDVAQRCKEL-GITALHIKLRATGGNRYGAGAESKRWAAPHSPVLFGAEEEDVTPIPSDS--TR |
AAMLAAQDVAQRCKEL.G..A.HI.LRATG.NR........R......P.L.....ED....PS.S..T. | |
Retrocopy | AAMLAAQDVAQRCKEL<GLAAVHITLRATGRNRARTLSLGPRLPSEPMP-LGKEDGED*ERHPSPSDNTH |
Parental | RKGG-RRGRRL |
RKGG..RGR.L | |
Retrocopy | RKGG<LRGRPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |