RetrogeneDB ID: | retro_cfam_1589 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 36:15097711..15098037(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS14 | ||
Ensembl ID: | ENSCAFG00000018094 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.93 % |
Parental protein coverage: | 66.67 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | NDTFVH--VTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQR-CKELGITALHIKLRAT-GGN |
.DT..H...T.L...ETIC.VTGGMKVKAD.DESSPYAAMLAAQDVAQR..K.LGITALHIKL..T..GN | |
Retrocopy | SDTSLHSSMTLLFMSETICHVTGGMKVKADPDESSPYAAMLAAQDVAQR<VKLLGITALHIKLQVT<EGN |
Parental | RT-KTPGPGAQS-ALRALARSGMKIGRIEDVTPIPSDSTRRKGG |
.T.KTPGPG..S.ALRALA.SG.KIG.IEDV..IPS.ST.RK.G | |
Retrocopy | GT<KTPGPGS*S<ALRALACSGVKIGWIEDVGHIPSNSTHRKRG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 329 .19 RPM |
SRP017611_brain | 0 .00 RPM | 125 .36 RPM |
SRP017611_kidney | 0 .00 RPM | 879 .42 RPM |
SRP017611_liver | 0 .00 RPM | 259 .31 RPM |