RetrogeneDB ID: | retro_mmul_1983 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:144829557..144830061(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000000701 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4224 | ||
Ensembl ID: | ENSMMUG00000002848 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S14 [Source:RefSeq peptide;Acc:NP_001253845] |
Percent Identity: | 70.93 % |
Parental protein coverage: | 98.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MAPRKG-KEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADR-DE |
M.P..G.K.KKEE.VISLGPQV.EGENV.G.CH.F.SFNDTFVHVTD.SGK.T.C.V..GMK.KADR.DE | |
Retrocopy | MVPTRG<KKKKEEHVISLGPQVVEGENVVGACHSFVSFNDTFVHVTDVSGKGTTCHVAAGMKMKADR<DE |
Parental | SSPYAAMLAAQDVAQRCKELGITALHI-KLRATGGNRTKTPGPGAQSALRALARSGMKI-GRIEDVTPI- |
SSP..A.LAAQ.VAQ.CKELGITALH..KL..T.GNRTK.PGPG.QSALR.L...G.KI.G.IED.TPI. | |
Retrocopy | SSPHTATLAAQEVAQQCKELGITALHVCKLQVTAGNRTKHPGPGTQSALRVLVCLGIKI>GQIEDATPI> |
Parental | PSDSTR-RGVAVVAVCEQDSSKYFLLINCLRV |
PSDSTR.R..A.V...EQ..SKYFLLINCL.V | |
Retrocopy | PSDSTRGRRIAMVTAWEQEPSKYFLLINCLYV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 100 .62 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 190 .07 RPM |
SRP007412_cerebellum | 0 .00 RPM | 110 .29 RPM |
SRP007412_heart | 0 .00 RPM | 250 .20 RPM |
SRP007412_kidney | 0 .00 RPM | 237 .32 RPM |
SRP007412_liver | 0 .00 RPM | 341 .77 RPM |
SRP007412_testis | 0 .00 RPM | 157 .67 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3113 |
Pan troglodytes | retro_ptro_2104 |
Gorilla gorilla | retro_ggor_2135 |
Pongo abelii | retro_pabe_2571 |