Parental gene: | CDC42, ENSPPYG00000001755 |
| Aliases: | None |
| Description: | cell division cycle 42 [Source:HGNC Symbol;Acc:1736] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 1:208356241..208398101(-) |
>ENSPPYG00000001755
ATGCAGACAATTAAGTGTGTTGTTGTGGGCGATGGTGCTGTTGGTAAAACATGTCTCCTGATATCCTACACAACAAACAA
ATTTCCATCGGAATATGTACCGACTGTTTTTGACAACTATGCAGTCACAGTTATGATTGGTGGAGAACCATATACTCTTG
GACTTTTTGATACTGCAGGGCAAGAGGATTATGACAGATTACGACCGCTGAGTTATCCACAAACAGATGTATTTCTAGTC
TGTTTTTCAGTGGTCTCTCCATCTTCATTTGAAAATGTGAAAGAAAAGTGGGTGCCTGAGATAACTCACCACTGTCCAAA
GACTCCTTTCTTGCTTGTTGGGACTCAAATTGATCTCAGAGATGACCCCTCTACTATTGAGAAACTTGCCAAGAACAAAC
AGAAGCCTATCACTCCAGAGACTGCTGAAAAGCTGGCCCGTGACCTGAAGGCTGTCAAGTATGTGGAGTGTTCTGCACTT
ACACAGAAAGGCCTAAAGAATGTATTTGACGAAGCAATATTGGCTGCCCTGGAGCCTCCAGAACCGAAGAAGAGCCGCAG
GTGTGTGCTGCTATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 56 .18 RPM |
| SRP007412_cerebellum | 63 .11 RPM |
| SRP007412_heart | 45 .03 RPM |
| SRP007412_kidney | 103 .42 RPM |
| SRP007412_liver | 72 .40 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000014707 | possible_ortholog | 5 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000005306 | possible_ortholog | 10 retrogenes | |
| Callithrix jacchus | ENSCJAG00000005912 | possible_ortholog | 6 retrogenes | |
| Cavia porcellus | ENSCPOG00000006543 | possible_ortholog | 4 retrogenes | |
| Equus caballus | ENSECAG00000019180 | possible_ortholog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000004443 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000004853 | ortholog_one2many | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000024439 | ortholog_one2one | 5 retrogenes | |
| Macaca mulatta | ENSMMUG00000022009 | ortholog_one2one | 8 retrogenes | |
| Monodelphis domestica | ENSMODG00000016078 | ortholog_one2one | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000015999 | possible_ortholog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000006699 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000009986 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000014261 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000008763 | other_paralog | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000011791 | other_paralog | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000012439 | within_species_paralog | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000013536 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000005184 | ortholog_one2one | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000000805 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_2240 | 71.20 | 63.87 | Please wait, loading  |
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| 2. | retro_pabe_2461 | 70.09 | 61.26 | Please wait, loading |
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| 3. | retro_pabe_2801 | 83.82 | 89.01 | Please wait, loading |
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| 4. | retro_pabe_3215 | 85.00 | 73.30 | Please wait, loading |
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| 5. | retro_pabe_3239 | 85.00 | 73.30 | Please wait, loading |
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| 6. | retro_pabe_3295 | 86.39 | 100.00 | Please wait, loading |
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Download FASTA sequences of all ENSPPYG00000001755 retrocopies