Parental gene:

CDC42, ENSPPYG00000001755

Aliases:None
Description:cell division cycle 42 [Source:HGNC Symbol;Acc:1736]
Organism:Orangutan (Pongo abelii)
Coordinates:1:208356241..208398101(-)


>ENSPPYG00000001755
ATGCAGACAATTAAGTGTGTTGTTGTGGGCGATGGTGCTGTTGGTAAAACATGTCTCCTGATATCCTACACAACAAACAA
ATTTCCATCGGAATATGTACCGACTGTTTTTGACAACTATGCAGTCACAGTTATGATTGGTGGAGAACCATATACTCTTG
GACTTTTTGATACTGCAGGGCAAGAGGATTATGACAGATTACGACCGCTGAGTTATCCACAAACAGATGTATTTCTAGTC
TGTTTTTCAGTGGTCTCTCCATCTTCATTTGAAAATGTGAAAGAAAAGTGGGTGCCTGAGATAACTCACCACTGTCCAAA
GACTCCTTTCTTGCTTGTTGGGACTCAAATTGATCTCAGAGATGACCCCTCTACTATTGAGAAACTTGCCAAGAACAAAC
AGAAGCCTATCACTCCAGAGACTGCTGAAAAGCTGGCCCGTGACCTGAAGGCTGTCAAGTATGTGGAGTGTTCTGCACTT
ACACAGAAAGGCCTAAAGAATGTATTTGACGAAGCAATATTGGCTGCCCTGGAGCCTCCAGAACCGAAGAAGAGCCGCAG
GTGTGTGCTGCTATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 56 .18 RPM
SRP007412_cerebellum 63 .11 RPM
SRP007412_heart 45 .03 RPM
SRP007412_kidney 103 .42 RPM
SRP007412_liver 72 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000014707 possible_ortholog 5 retrogenes
retro_cfam_1587, retro_cfam_1970, retro_cfam_2189, retro_cfam_88, retro_cfam_89,
Choloepus hoffmanni ENSCHOG00000005306 possible_ortholog 10 retrogenes
retro_chof_103, retro_chof_1044, retro_chof_1195, retro_chof_1853, retro_chof_2055, retro_chof_2105, retro_chof_2331, retro_chof_2407, retro_chof_50, retro_chof_800,
Callithrix jacchus ENSCJAG00000005912 possible_ortholog 6 retrogenes
retro_cjac_1275, retro_cjac_1808, retro_cjac_1826, retro_cjac_2251, retro_cjac_751, retro_cjac_911,
Cavia porcellus ENSCPOG00000006543 possible_ortholog 4 retrogenes
retro_cpor_1168, retro_cpor_286, retro_cpor_33, retro_cpor_887,
Equus caballus ENSECAG00000019180 possible_ortholog 1 retrogene
retro_ecab_11,
Echinops telfairi ENSETEG00000004443 possible_ortholog 1 retrogene
retro_etel_2010,
Felis catus ENSFCAG00000004853 ortholog_one2many 4 retrogenes
retro_fcat_129, retro_fcat_1421, retro_fcat_1579, retro_fcat_896,
Gorilla gorilla ENSGGOG00000024439 ortholog_one2one 5 retrogenes
retro_ggor_1932, retro_ggor_2057, retro_ggor_2303, retro_ggor_2593, retro_ggor_2695,
Macaca mulatta ENSMMUG00000022009 ortholog_one2one 8 retrogenes
retro_mmul_1449, retro_mmul_1612, retro_mmul_1685, retro_mmul_1900, retro_mmul_1932, retro_mmul_24, retro_mmul_349, retro_mmul_598,
Monodelphis domestica ENSMODG00000016078 ortholog_one2one 3 retrogenes
retro_mdom_18, retro_mdom_181, retro_mdom_537,
Mustela putorius furo ENSMPUG00000015999 possible_ortholog 2 retrogenes
retro_mputfur_308, retro_mputfur_957,
Mus musculus ENSMUSG00000006699 ortholog_one2one 3 retrogenes
retro_mmus_2816, retro_mmus_2995, retro_mmus_3170,
Oryctolagus cuniculus ENSOCUG00000009986 possible_ortholog 1 retrogene
retro_ocun_60,
Otolemur garnettii ENSOGAG00000014261 possible_ortholog 1 retrogene
retro_ogar_131,
Pongo abelii ENSPPYG00000008763 other_paralog 2 retrogenes
retro_pabe_1047, retro_pabe_2546,
Pongo abelii ENSPPYG00000011791 other_paralog 3 retrogenes
retro_pabe_1591, retro_pabe_21, retro_pabe_3818,
Pongo abelii ENSPPYG00000012439 within_species_paralog 2 retrogenes
retro_pabe_1107, retro_pabe_2195,
Rattus norvegicus ENSRNOG00000013536 ortholog_one2one 1 retrogene
retro_rnor_2062,
Sorex araneus ENSSARG00000005184 ortholog_one2one 3 retrogenes
retro_sara_10, retro_sara_220, retro_sara_3,
Ictidomys tridecemlineatus ENSSTOG00000000805 ortholog_one2one 4 retrogenes
retro_itri_1158, retro_itri_1602, retro_itri_1615, retro_itri_431,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2240 71.20 63.87
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2. retro_pabe_2461 70.09 61.26
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3. retro_pabe_2801 83.82 89.01
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4. retro_pabe_3215 85.00 73.30
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5. retro_pabe_3239 85.00 73.30
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6. retro_pabe_3295 86.39 100.00
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Download FASTA sequences of all ENSPPYG00000001755 retrocopies