RetrogeneDB ID: | retro_pabe_3295 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 8:151362633..151363206(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC42 | ||
Ensembl ID: | ENSPPYG00000001755 | ||
Aliases: | None | ||
Description: | cell division cycle 42 [Source:HGNC Symbol;Acc:1736] |
Percent Identity: | 86.39 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL |
MQTIKCVVVG.GAVGKTCLLISYTTNKFPS.YVPTVF.NYAVTVMIGGEPYTLGLFDTAG..D.DRL..L | |
Retrocopy | MQTIKCVVVGNGAVGKTCLLISYTTNKFPSKYVPTVFNNYAVTVMIGGEPYTLGLFDTAGNNDDDRL*LL |
Parental | SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPE |
SY..TDVF.VCFSVVSPSSFENVK.KWV.EITHHCPKT.FLLVGTQI.LRDDPSTIEKLAKNKQKPITP. | |
Retrocopy | SYLHTDVFPVCFSVVSPSSFENVKGKWVSEITHHCPKTHFLLVGTQIHLRDDPSTIEKLAKNKQKPITPG |
Parental | TAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL |
T.EKL..DLKAV.YV.CSALTQKGL.NVFDEAILAALEPP..KK..RCVLL | |
Retrocopy | TTEKLIPDLKAVRYVVCSALTQKGLRNVFDEAILAALEPP*LKKTHRCVLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .39 RPM | 56 .18 RPM |
SRP007412_cerebellum | 0 .24 RPM | 63 .11 RPM |
SRP007412_heart | 0 .00 RPM | 45 .03 RPM |
SRP007412_kidney | 0 .00 RPM | 103 .42 RPM |
SRP007412_liver | 0 .03 RPM | 72 .40 RPM |