RetrogeneDB ID: | retro_pabe_2801 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:175742582..175743077(-) | ||
Located in intron of: | ENSPPYG00000016053 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC42 | ||
Ensembl ID: | ENSPPYG00000001755 | ||
Aliases: | None | ||
Description: | cell division cycle 42 [Source:HGNC Symbol;Acc:1736] |
Percent Identity: | 83.82 % |
Parental protein coverage: | 89.01 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG-LFDTAGQ-EDYDRLR |
MQ.IKCVV.GD.AVGK.CLLISYTTNK.PSE...TVFDNYAVTVM.G.EPYTLG..FDTAGQ...YDRL. | |
Retrocopy | MQIIKCVV-GDSAVGKKCLLISYTTNKLPSE*-RTVFDNYAVTVMTGREPYTLG<IFDTAGQ<KVYDRL* |
Parental | PLSYPQTDVFLVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI |
.LSYPQTDVFLVCFSVVSPSSFENVK..KWVPEIT...PKTPFLLVGTQ.DLRDDPSTIEKLAKNKQKPI | |
Retrocopy | LLSYPQTDVFLVCFSVVSPSSFENVKK<KWVPEIT--VPKTPFLLVGTQTDLRDDPSTIEKLAKNKQKPI |
Parental | TPETAEKLARDLKAVKYVECSALTQKGLKNVFD |
T.ETA.KLARDLKAV.YVEC..LTQKGLKNVFD | |
Retrocopy | TLETAKKLARDLKAVRYVECFTLTQKGLKNVFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 56 .18 RPM |
SRP007412_cerebellum | 0 .12 RPM | 63 .11 RPM |
SRP007412_heart | 0 .03 RPM | 45 .03 RPM |
SRP007412_kidney | 0 .03 RPM | 103 .42 RPM |
SRP007412_liver | 0 .03 RPM | 72 .40 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3404 |
Gorilla gorilla | retro_ggor_2303 |
Callithrix jacchus | retro_cjac_1808 |