Parental gene:

ENSMODG00000003534

Aliases:None
Description:None
Organism:Opossum (Monodelphis domestica)
Coordinates:3:69312008..69317283(-)


>ENSMODG00000003534
ATGGTGAGGTATTCTCTTGATCCAGAGAATCCTACAAAATCATGCAAGTCAAGGGGCTCAAATCTCCGGGTCCACTTCAA
GAACACCCGTGAAACAGCCCAAGCTATCAAGGGCATGCATATCCGAAAAGCTACCAAATATTTGAAAGATGTCACATTGA
AGAAACAGTGTGTTCCTTTCCGTCGGTACAATGGTGGAGTTGGCAGGTGTGCCCAGGCTAAGCAGTGGGGTTGGACACAA
GGTCGTTGGCCCAAAAAGAGTGCTGAATTCTTGCTGCATATGCTAAAAAATGCAGAGAGTAATGCAGAACTTAAGGGTTT
GGATGTGGATTCTCTTGTCATTGAGCATATCCAGGTTAACAAAGCTCCCAAAATGCGAAGACGGACTTACAGAGCTCATG
GGCGAATCAACCCATACATGAGTTCCCCTTGCCATATTGAGATGATACTTACTGAAAAGGAGCAGATTGTTCCTAAACCA
GAAGAAGAGGTTGCTCAAAAGAAAAAGATATCCCAAAAGAAACTGAAGAAACAAAAACTTATGGCACGGGAGTAA

Library Parental gene expression (RPM)
SRP007412_brain 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .00 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000022902 ortholog_one2one 5 retrogenes
Choloepus hoffmanni ENSCHOG00000007872 possible_ortholog 50 retrogenes
Echinops telfairi ENSETEG00000011322 possible_ortholog 10 retrogenes
Homo sapiens ENSG00000215472 possible_ortholog 1 retrogene
Latimeria chalumnae ENSLACG00000008835 ortholog_one2many 1 retrogene
Macropus eugenii ENSMEUG00000016709 possible_ortholog 26 retrogenes
Microcebus murinus ENSMICG00000017102 possible_ortholog 14 retrogenes
Myotis lucifugus ENSMLUG00000025554 ortholog_one2many 22 retrogenes
Myotis lucifugus ENSMLUG00000029264 ortholog_one2many 36 retrogenes
Macaca mulatta ENSMMUG00000018837 possible_ortholog 26 retrogenes
Oryctolagus cuniculus ENSOCUG00000012485 ortholog_one2many 2 retrogenes
Procavia capensis ENSPCAG00000003103 possible_ortholog 8 retrogenes
Pongo abelii ENSPPYG00000009151 possible_ortholog 43 retrogenes
Pteropus vampyrus ENSPVAG00000001969 possible_ortholog 76 retrogenes
Rattus norvegicus ENSRNOG00000018680 ortholog_one2one 48 retrogenes
Sarcophilus harrisii ENSSHAG00000003060 possible_ortholog 14 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000005193 ortholog_one2one 33 retrogenes
Tarsius syrichta ENSTSYG00000007402 possible_ortholog 20 retrogenes
Tursiops truncatus ENSTTRG00000005797 possible_ortholog 31 retrogenes
Vicugna pacos ENSVPAG00000009568 possible_ortholog 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_91 92.93 100.00
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2. retro_mdom_321 78.20 71.74
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3. retro_mdom_337 87.03 100.00
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4. retro_mdom_491 90.71 99.46
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5. retro_mdom_541 59.18 52.72
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6. retro_mdom_1153 57.94 58.15
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7. retro_mdom_1194 94.05 91.30
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8. retro_mdom_1437 82.98 100.00
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9. retro_mdom_1734 65.03 75.54
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10. retro_mdom_1783 79.38 85.87
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11. retro_mdom_1980 97.54 66.30
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Download FASTA sequences of all ENSMODG00000003534 retrocopies