RetrogeneDB - Parental gene ENSFCAG00000011342 details

                            
>ENSFCAG00000011342
ATGGTTCGCTATTCACTTGACCCGGAAAACCCGACAAAATCATGCAAATCAAGAGGTTCAAATCTTCGTGTTCACTTTAA

GAACACACGGGAAACTGCCCAGGCCATCAAGGGCATGCATATCCGAAAAGCCACCAAGTATCTGAAAGATGTCACTTTGC

AGAAGCAATGTGTGCCGTTCCGACGCTACAATGGTGGAGTTGGTAGGTGTGCCCAGGCCAAACAGTGGGGCTGGACACAG

GGTCGGTGGCCCAAAAAGAGTGCCGAATTTTTACTGCACATGCTTAAAAATGCAGAGAGTAATGCTGAACTTAAGGGTTT

AGATGTAGATTCTCTGGTCATTGAGCACATCCAGGTGAACAAAGCCCCCAAAATGCGGCGTAGAACTTACAGGGCTCATG

GTCGGATTAACCCATACATGAGCTCTCCCTGCCACATTGAGATGATCCTTACTGAAAAAGAGCAGATTGTTCCTAAACCA

GAAGAGGAGGTTGCACAGAAGAAAAAGATATCCCAGAAGAAACTGAAGAAACAAAAACTTATGGCCCGGGAGTAA

Library	Parental gene expression (RPM)
SRP017611_brain	157 .12 RPM
SRP017611_kidney	889 .08 RPM
SRP017611_liver	339 .97 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000009498	ortholog_one2one	40 retrogenes	retro_amel_1147, retro_amel_1150, retro_amel_1252, retro_amel_1273, retro_amel_132, retro_amel_1422, retro_amel_1435, retro_amel_1487, retro_amel_1541, retro_amel_156, retro_amel_1567, retro_amel_1582, retro_amel_1599, retro_amel_1622, retro_amel_1624, retro_amel_1652, retro_amel_1703, retro_amel_1704, retro_amel_1743, retro_amel_1757, retro_amel_184, retro_amel_1908, retro_amel_1922, retro_amel_208, retro_amel_359, retro_amel_401, retro_amel_425, retro_amel_426, retro_amel_452, retro_amel_486, retro_amel_589, retro_amel_731, retro_amel_736, retro_amel_780, retro_amel_820, retro_amel_834, retro_amel_865, retro_amel_950, retro_amel_953, retro_amel_980,
Canis familiaris	ENSCAFG00000019044	ortholog_one2many	7 retrogenes	retro_cfam_102, retro_cfam_171, retro_cfam_175, retro_cfam_189, retro_cfam_2, retro_cfam_239, retro_cfam_34,
Choloepus hoffmanni	ENSCHOG00000007872	possible_ortholog	50 retrogenes	retro_chof_1020, retro_chof_1021, retro_chof_107, retro_chof_1232, retro_chof_130, retro_chof_137, retro_chof_1405, retro_chof_1432, retro_chof_1448, retro_chof_1453, retro_chof_1471, retro_chof_1475, retro_chof_153, retro_chof_1634, retro_chof_1671, retro_chof_1678, retro_chof_1754, retro_chof_1786, retro_chof_187, retro_chof_1871, retro_chof_1895, retro_chof_1901, retro_chof_1908, retro_chof_2038, retro_chof_204, retro_chof_2133, retro_chof_2140, retro_chof_221, retro_chof_2243, retro_chof_2415, retro_chof_2458, retro_chof_246, retro_chof_2489, retro_chof_2534, retro_chof_2570, retro_chof_2610, retro_chof_2640, retro_chof_463, retro_chof_507, retro_chof_564, retro_chof_65, retro_chof_690, retro_chof_716, retro_chof_759, retro_chof_775, retro_chof_798, retro_chof_875, retro_chof_899, retro_chof_945, retro_chof_953,
Callithrix jacchus	ENSCJAG00000004779	possible_ortholog	4 retrogenes	retro_cjac_122, retro_cjac_248, retro_cjac_360, retro_cjac_376,
Echinops telfairi	ENSETEG00000011322	possible_ortholog	10 retrogenes	retro_etel_1787, retro_etel_1810, retro_etel_1900, retro_etel_1936, retro_etel_1954, retro_etel_207, retro_etel_396, retro_etel_470, retro_etel_565, retro_etel_831,
Homo sapiens	ENSG00000215472	possible_ortholog	1 retrogene	retro_hsap_2367,
Gorilla gorilla	ENSGGOG00000026697	possible_ortholog	1 retrogene	retro_ggor_167,
Latimeria chalumnae	ENSLACG00000008835	ortholog_one2many	1 retrogene	retro_lcha_38,
Loxodonta africana	ENSLAFG00000005569	ortholog_one2one	16 retrogenes	retro_lafr_1001, retro_lafr_1036, retro_lafr_1060, retro_lafr_1130, retro_lafr_177, retro_lafr_186, retro_lafr_207, retro_lafr_213, retro_lafr_256, retro_lafr_293, retro_lafr_354, retro_lafr_721, retro_lafr_731, retro_lafr_773, retro_lafr_860, retro_lafr_933,
Macropus eugenii	ENSMEUG00000016709	possible_ortholog	26 retrogenes	retro_meug_1111, retro_meug_127, retro_meug_1285, retro_meug_1485, retro_meug_1821, retro_meug_188, retro_meug_1886, retro_meug_191, retro_meug_204, retro_meug_2159, retro_meug_2167, retro_meug_2183, retro_meug_257, retro_meug_326, retro_meug_355, retro_meug_373, retro_meug_410, retro_meug_413, retro_meug_509, retro_meug_58, retro_meug_703, retro_meug_738, retro_meug_740, retro_meug_779, retro_meug_81, retro_meug_934,
Microcebus murinus	ENSMICG00000017102	possible_ortholog	14 retrogenes	retro_mmur_1046, retro_mmur_1047, retro_mmur_107, retro_mmur_1305, retro_mmur_1360, retro_mmur_1614, retro_mmur_195, retro_mmur_325, retro_mmur_335, retro_mmur_427, retro_mmur_484, retro_mmur_754, retro_mmur_817, retro_mmur_855,
Macaca mulatta	ENSMMUG00000018837	possible_ortholog	26 retrogenes	retro_mmul_1015, retro_mmul_1046, retro_mmul_1205, retro_mmul_1216, retro_mmul_1225, retro_mmul_1441, retro_mmul_163, retro_mmul_172, retro_mmul_1784, retro_mmul_1858, retro_mmul_1952, retro_mmul_2006, retro_mmul_2008, retro_mmul_2257, retro_mmul_2268, retro_mmul_2284, retro_mmul_2304, retro_mmul_2512, retro_mmul_46, retro_mmul_474, retro_mmul_589, retro_mmul_652, retro_mmul_669, retro_mmul_825, retro_mmul_956, retro_mmul_971,
Mustela putorius furo	ENSMPUG00000000801	ortholog_one2many	7 retrogenes	retro_mputfur_1008, retro_mputfur_126, retro_mputfur_1349, retro_mputfur_16, retro_mputfur_184, retro_mputfur_40, retro_mputfur_536,
Procavia capensis	ENSPCAG00000003103	possible_ortholog	8 retrogenes	retro_pcap_193, retro_pcap_196, retro_pcap_197, retro_pcap_200, retro_pcap_206, retro_pcap_250, retro_pcap_363, retro_pcap_52,
Pongo abelii	ENSPPYG00000009151	possible_ortholog	43 retrogenes	retro_pabe_1177, retro_pabe_1178, retro_pabe_1179, retro_pabe_1197, retro_pabe_1373, retro_pabe_1408, retro_pabe_1448, retro_pabe_1464, retro_pabe_1531, retro_pabe_1565, retro_pabe_1574, retro_pabe_1725, retro_pabe_1807, retro_pabe_1832, retro_pabe_1902, retro_pabe_2052, retro_pabe_2053, retro_pabe_2088, retro_pabe_2102, retro_pabe_2164, retro_pabe_2231, retro_pabe_2317, retro_pabe_2520, retro_pabe_2635, retro_pabe_2638, retro_pabe_2871, retro_pabe_2917, retro_pabe_2921, retro_pabe_2971, retro_pabe_3020, retro_pabe_3029, retro_pabe_3103, retro_pabe_3187, retro_pabe_3248, retro_pabe_3253, retro_pabe_3262, retro_pabe_3277, retro_pabe_347, retro_pabe_3493, retro_pabe_539, retro_pabe_567, retro_pabe_617, retro_pabe_882,
Pteropus vampyrus	ENSPVAG00000001969	possible_ortholog	76 retrogenes	retro_pvam_1003, retro_pvam_1005, retro_pvam_1020, retro_pvam_1036, retro_pvam_1037, retro_pvam_104, retro_pvam_1042, retro_pvam_1085, retro_pvam_1093, retro_pvam_1105, retro_pvam_1155, retro_pvam_1162, retro_pvam_1186, retro_pvam_1194, retro_pvam_1204, retro_pvam_1218, retro_pvam_1279, retro_pvam_1336, retro_pvam_1338, retro_pvam_1351, retro_pvam_1366, retro_pvam_1372, retro_pvam_138, retro_pvam_1392, retro_pvam_1397, retro_pvam_1407, retro_pvam_1409, retro_pvam_142, retro_pvam_143, retro_pvam_1452, retro_pvam_1454, retro_pvam_182, retro_pvam_206, retro_pvam_220, retro_pvam_263, retro_pvam_268, retro_pvam_278, retro_pvam_292, retro_pvam_309, retro_pvam_339, retro_pvam_348, retro_pvam_395, retro_pvam_40, retro_pvam_402, retro_pvam_417, retro_pvam_424, retro_pvam_439, retro_pvam_442, retro_pvam_455, retro_pvam_464, retro_pvam_497, retro_pvam_520, retro_pvam_55, retro_pvam_571, retro_pvam_577, retro_pvam_584, retro_pvam_588, retro_pvam_596, retro_pvam_604, retro_pvam_608, retro_pvam_654, retro_pvam_659, retro_pvam_684, retro_pvam_700, retro_pvam_701, retro_pvam_705, retro_pvam_712, retro_pvam_716, retro_pvam_726, retro_pvam_751, retro_pvam_756, retro_pvam_777, retro_pvam_862, retro_pvam_88, retro_pvam_925, retro_pvam_966,
Sarcophilus harrisii	ENSSHAG00000003060	possible_ortholog	14 retrogenes	retro_shar_206, retro_shar_214, retro_shar_279, retro_shar_387, retro_shar_457, retro_shar_586, retro_shar_593, retro_shar_606, retro_shar_713, retro_shar_743, retro_shar_751, retro_shar_800, retro_shar_802, retro_shar_817,
Sus scrofa	ENSSSCG00000029642	ortholog_one2one	30 retrogenes	retro_sscr_1002, retro_sscr_1003, retro_sscr_1033, retro_sscr_1067, retro_sscr_108, retro_sscr_110, retro_sscr_1106, retro_sscr_111, retro_sscr_1151, retro_sscr_1170, retro_sscr_121, retro_sscr_180, retro_sscr_340, retro_sscr_370, retro_sscr_386, retro_sscr_403, retro_sscr_413, retro_sscr_442, retro_sscr_460, retro_sscr_481, retro_sscr_496, retro_sscr_502, retro_sscr_592, retro_sscr_613, retro_sscr_768, retro_sscr_823, retro_sscr_848, retro_sscr_857, retro_sscr_881, retro_sscr_931,
Tarsius syrichta	ENSTSYG00000007402	possible_ortholog	20 retrogenes	retro_tsyr_1042, retro_tsyr_1298, retro_tsyr_1349, retro_tsyr_1416, retro_tsyr_1555, retro_tsyr_159, retro_tsyr_180, retro_tsyr_1801, retro_tsyr_1940, retro_tsyr_2021, retro_tsyr_2053, retro_tsyr_2088, retro_tsyr_253, retro_tsyr_304, retro_tsyr_693, retro_tsyr_752, retro_tsyr_77, retro_tsyr_819, retro_tsyr_860, retro_tsyr_868,
Tursiops truncatus	ENSTTRG00000005797	possible_ortholog	31 retrogenes	retro_ttru_1153, retro_ttru_1338, retro_ttru_1374, retro_ttru_1436, retro_ttru_1509, retro_ttru_1716, retro_ttru_1757, retro_ttru_178, retro_ttru_1784, retro_ttru_1811, retro_ttru_1854, retro_ttru_1856, retro_ttru_193, retro_ttru_1932, retro_ttru_232, retro_ttru_264, retro_ttru_299, retro_ttru_447, retro_ttru_49, retro_ttru_568, retro_ttru_609, retro_ttru_627, retro_ttru_636, retro_ttru_660, retro_ttru_691, retro_ttru_703, retro_ttru_747, retro_ttru_800, retro_ttru_836, retro_ttru_884, retro_ttru_992,
Vicugna pacos	ENSVPAG00000009568	possible_ortholog	1 retrogene	retro_vpac_10,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_fcat_211	63.28	67.93	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_fcat_264	69.49	62.50	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_fcat_360	83.70	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_fcat_461	68.59	98.91	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_fcat_481	80.82	78.80	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_fcat_488	85.64	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_fcat_532	60.42	99.46	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_fcat_607	73.63	98.37	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_fcat_734	96.22	100.00	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_fcat_791	78.91	78.80	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_fcat_808	64.41	60.87	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_fcat_855	80.46	94.02	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_fcat_900	78.16	94.02	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_fcat_917	65.45	59.24	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_fcat_988	71.01	72.83	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_fcat_1002	78.92	99.46	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_fcat_1004	93.51	100.00	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_fcat_1019	72.73	81.52	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_fcat_1050	81.97	97.28	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_fcat_1065	82.22	71.74	Please wait, loading	Please wait, loading	Please wait, loading
21.	retro_fcat_1196	86.86	72.83	Please wait, loading	Please wait, loading	Please wait, loading
22.	retro_fcat_1235	90.16	99.46	Please wait, loading	Please wait, loading	Please wait, loading
23.	retro_fcat_1300	63.59	98.37	Please wait, loading	Please wait, loading	Please wait, loading
24.	retro_fcat_1322	76.47	100.00	Please wait, loading	Please wait, loading	Please wait, loading
25.	retro_fcat_1426	73.33	64.67	Please wait, loading	Please wait, loading	Please wait, loading
26.	retro_fcat_1427	63.04	97.28	Please wait, loading	Please wait, loading	Please wait, loading
27.	retro_fcat_1432	63.08	70.65	Please wait, loading	Please wait, loading	Please wait, loading
28.	retro_fcat_1516	80.00	85.33	Please wait, loading	Please wait, loading	Please wait, loading
29.	retro_fcat_1525	75.00	86.96	Please wait, loading	Please wait, loading	Please wait, loading
30.	retro_fcat_1539	75.14	94.57	Please wait, loading	Please wait, loading	Please wait, loading
31.	retro_fcat_1552	75.72	91.85	Please wait, loading	Please wait, loading	Please wait, loading
32.	retro_fcat_1588	78.45	95.65	Please wait, loading	Please wait, loading	Please wait, loading
33.	retro_fcat_1655	79.23	96.74	Please wait, loading	Please wait, loading	Please wait, loading
34.	retro_fcat_1692	86.27	82.07	Please wait, loading	Please wait, loading	Please wait, loading
35.	retro_fcat_1699	93.43	74.46	Please wait, loading	Please wait, loading	Please wait, loading
36.	retro_fcat_1703	81.33	89.67	Please wait, loading	Please wait, loading	Please wait, loading
37.	retro_fcat_1740	68.45	100.00	Please wait, loading	Please wait, loading	Please wait, loading
38.	retro_fcat_1746	67.86	90.22	Please wait, loading	Please wait, loading	Please wait, loading
39.	retro_fcat_1821	81.06	71.74	Please wait, loading	Please wait, loading	Please wait, loading
40.	retro_fcat_1864	84.41	100.00	Please wait, loading	Please wait, loading	Please wait, loading
41.	retro_fcat_1892	79.89	99.46	Please wait, loading	Please wait, loading	Please wait, loading
42.	retro_fcat_1917	78.45	98.37	Please wait, loading	Please wait, loading	Please wait, loading
43.	retro_fcat_2023	72.32	60.87	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSFCAG00000011342 retrocopies

Parental gene:	RPL17, ENSFCAG00000011342
Aliases:	None
Description:	60S ribosomal protein L17 [Source:UniProtKB/Swiss-Prot;Acc:Q5XTY7]
Organism:	*Cat (Felis catus)*
Coordinates:	D3:70479543..70482533(-)

Parental gene:

RPL17, ENSFCAG00000011342