Parental gene:

RPL17, ENSCJAG00000004779

Aliases:None
Description:ribosomal protein L17 [Source:HGNC Symbol;Acc:10307]
Organism:Marmoset (Callithrix jacchus)
Coordinates:13:87406588..87410611(-)


>ENSCJAG00000004779
ATGGTTCGCTATTCACTTGATCCGGAGAACCCCACAAAGTCATGCAAATCAAGAGGTTCCAATCTTCGCGTTCACTTTAA
GAACACACGTGAAACTGCCCAGGCCATCAAGGGTATGCATATACGAAAAGCCACGAAGTATCTGAAAGATGTCACTTTAC
AGAAACAGTGCGTACCATTCCGACGTTACAATGGTGGAGTTGGCAGGTGCGCCCAGGCCAAGCAGTGGGGCTGGACACAA
GGTCGGTGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTAATGCTGAACTTAAGGGTTT
AGATGTAGATTCTCTGGTCATTGAGCATATCCAAGTGAACAAAGCACCCAAGATGCGCCGCCGGACCTACAGAGCTCATG
GTCGAATTAACCCATACATGAGTTCTCCCTGCCACATTGAGATGATCCTTACTGAAAAGGAACAGATTGTTCCTAAACCA
GAAGAGGAGGTTGCCCAGAAGAAGAAGATATCCCAGAAGAAACTGAAGAAGCAAAAACTTATGGCACGGGAGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 168 .89 RPM
SRP051959_skeletal_muscle 103 .14 RPM
SRP051959_lymph_node 209 .88 RPM
SRP051959_lung 131 .03 RPM
SRP051959_liver 134 .32 RPM
SRP051959_kidney 123 .31 RPM
SRP051959_heart 99 .56 RPM
SRP051959_colon 103 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009498 possible_ortholog 40 retrogenes
Canis familiaris ENSCAFG00000019044 possible_ortholog 7 retrogenes
Choloepus hoffmanni ENSCHOG00000007872 possible_ortholog 50 retrogenes
Echinops telfairi ENSETEG00000011322 possible_ortholog 10 retrogenes
Felis catus ENSFCAG00000011342 possible_ortholog 43 retrogenes
Homo sapiens ENSG00000215472 possible_ortholog 1 retrogene
Homo sapiens ENSG00000265681 ortholog_one2one 33 retrogenes
Gorilla gorilla ENSGGOG00000026697 ortholog_one2many 1 retrogene
Latimeria chalumnae ENSLACG00000008835 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000005569 ortholog_one2many 16 retrogenes
Macropus eugenii ENSMEUG00000016709 possible_ortholog 26 retrogenes
Microcebus murinus ENSMICG00000017102 possible_ortholog 14 retrogenes
Macaca mulatta ENSMMUG00000018837 possible_ortholog 26 retrogenes
Mustela putorius furo ENSMPUG00000000801 possible_ortholog 7 retrogenes
Procavia capensis ENSPCAG00000003103 possible_ortholog 8 retrogenes
Pongo abelii ENSPPYG00000009151 possible_ortholog 43 retrogenes
Pteropus vampyrus ENSPVAG00000001969 possible_ortholog 76 retrogenes
Sarcophilus harrisii ENSSHAG00000003060 possible_ortholog 14 retrogenes
Sus scrofa ENSSSCG00000029642 possible_ortholog 30 retrogenes
Tarsius syrichta ENSTSYG00000007402 possible_ortholog 20 retrogenes
Tursiops truncatus ENSTTRG00000005797 possible_ortholog 31 retrogenes
Vicugna pacos ENSVPAG00000009568 possible_ortholog 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_122 90.71 99.46
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2. retro_cjac_248 91.30 100.00
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3. retro_cjac_360 100.00 100.00
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4. retro_cjac_376 95.11 100.00
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Download FASTA sequences of all ENSCJAG00000004779 retrocopies