Parental gene:

RPL9, ENSTTRG00000014289

Aliases:None
Description:ribosomal protein L9 [Source:HGNC Symbol;Acc:10369]
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_2135:242411..245986(-)


>ENSTTRG00000014289
ATGAAGACCATTCTCAGCAATCAGACTGTCGACATTCCAGAAAATGTCGACATTACTCTGAAGGGACGCACAGTTATTGT
GAAGGGCCCCAGAGGCACCCTGCGGAGGGACTTTAATCACATAAATGTAGAACTCAGTCTTCTTGGGAAGAAAAAGAAGA
GGCTCCGGGTTGACAAATGGTGGGGGAATAGGAAGGAACTGGCCACTGTTCGCACTATCTGTAGTCATGTACAGAACATG
ATCAAGGGTGTTACACTGGGCTTCCGTTACAAGATGAGGTCTGTGTATGCTCACTTCCCCATCAACGTTGTTATTCAGGA
GAATGGTTCTCTTGTTGAAATCCGAAATTTTTTGGGTGAAAAATACATCCGCAGGGTTCGGATGAGGCCAGGTGTTGCTT
GTTCAGTATCTCAAGCCCAGAAAGATGAGTTGATTCTTGAAGGAAATGACATTGAACTTGTGTCAAATTCAGCTGCTTTG
ATTCAGCAAGCCCCAACAGTAAAAAACCAGGATATCAGAAAATTTTTGGATGGTATCTATGTTTCTAAAGGAACAGTT

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000007317 ortholog_one2one 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000003187 ortholog_one2many 31 retrogenes
Bos taurus ENSBTAG00000014518 ortholog_one2many 3 retrogenes
Canis familiaris ENSCAFG00000016008 possible_ortholog 28 retrogenes
Danio rerio ENSDARG00000037350 ortholog_one2one 1 retrogene
Dasypus novemcinctus ENSDNOG00000007411 possible_ortholog 18 retrogenes
Erinaceus europaeus ENSEEUG00000004394 possible_ortholog 39 retrogenes
Gadus morhua ENSGMOG00000001002 ortholog_one2one 1 retrogene
Loxodonta africana ENSLAFG00000012021 possible_ortholog 38 retrogenes
Macropus eugenii ENSMEUG00000016722 ortholog_one2many 8 retrogenes
Myotis lucifugus ENSMLUG00000004597 possible_ortholog 34 retrogenes
Macaca mulatta ENSMMUG00000008553 possible_ortholog 22 retrogenes
Monodelphis domestica ENSMODG00000020553 ortholog_one2one 7 retrogenes
Otolemur garnettii ENSOGAG00000004935 possible_ortholog 20 retrogenes
Procavia capensis ENSPCAG00000005834 ortholog_one2one 22 retrogenes
Pongo abelii ENSPPYG00000014675 possible_ortholog 10 retrogenes
Sarcophilus harrisii ENSSHAG00000004918 ortholog_one2one 8 retrogenes
Tupaia belangeri ENSTBEG00000006042 possible_ortholog 18 retrogenes
Vicugna pacos ENSVPAG00000002023 possible_ortholog 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ttru_60 80.00 98.39
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2. retro_ttru_283 85.71 86.02
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3. retro_ttru_500 68.55 65.05
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4. retro_ttru_653 84.32 98.39
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5. retro_ttru_910 95.78 88.71
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6. retro_ttru_1019 67.19 67.74
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7. retro_ttru_1067 62.24 75.81
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8. retro_ttru_1116 95.93 91.94
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9. retro_ttru_1179 95.93 91.94
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10. retro_ttru_1242 86.16 84.95
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11. retro_ttru_1250 56.00 52.15
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12. retro_ttru_1354 73.15 79.03
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13. retro_ttru_1386 67.96 53.76
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Download FASTA sequences of all ENSTTRG00000014289 retrocopies