RetrogeneDB ID: | retro_pcap_243 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_208261:1101..1417(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL9 | ||
Ensembl ID: | ENSPCAG00000005834 | ||
Aliases: | None | ||
Description: | ribosomal protein L9 [Source:HGNC Symbol;Acc:10369] |
Percent Identity: | 55.05 % |
Parental protein coverage: | 54.69 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | FRYKMR-SVYAHFP-INVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEG--NDIEL |
F.YKMR....AHF..INV.I.EN.S.VEI.NF.GEKY..R..MRPGV.C........E..L......IEL | |
Retrocopy | FLYKMR<AECAHFS<INVII*ENKSGVEIPNFWGEKYTQRICMRPGV-CGLLSISSSER*LNS*RKHIEL |
Parental | VSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQADE |
VS.S.ALIQQA..VKNK.I.K.LD.IYV.....V.Q.DE | |
Retrocopy | VSDSVALIQQAVRVKNKNIGKILDSIYVLKNKMVSQPDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |