RetrogeneDB ID: | retro_pcap_75 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_4224:97970..98270(+) | ||
Located in intron of: | ENSPCAG00000003802 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL9 | ||
Ensembl ID: | ENSPCAG00000005834 | ||
Aliases: | None | ||
Description: | ribosomal protein L9 [Source:HGNC Symbol;Acc:10369] |
Percent Identity: | 65.35 % |
Parental protein coverage: | 52.08 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | RSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQ |
R.....FPINV.IQE..SLVEI.NFLGEKY...V.M.PGVAC.V.QAQ.D..IL.GN.IE.VSNSAAL.Q | |
Retrocopy | RPAHVRFPINVLIQETESLVEI*NFLGEKYFYMVPMNPGVACLVPQAQNDGIILVGN-IEPVSNSAALTQ |
Parental | QATTVKNKDIRKFLDGIYVSEKGTVQ-QADE |
QATTVKN..I.K....IYVS..GT.Q..ADE | |
Retrocopy | QATTVKNQNI*KYPGAIYVSG*GTGQWTADE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |