RetrogeneDB ID: | retro_pcap_50 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_2612:151321..151638(+) | ||
Located in intron of: | ENSPCAG00000001274 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL9 | ||
Ensembl ID: | ENSPCAG00000005834 | ||
Aliases: | None | ||
Description: | ribosomal protein L9 [Source:HGNC Symbol;Acc:10369] |
Percent Identity: | 76.64 % |
Parental protein coverage: | 55.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELIL-EGNDIELVS |
GF.YKM..VYAHFPIN.V.Q.N.SLV.IRNFLGEKY..R..MRP..ACSVSQAQKDELIL..GNDIE.VS | |
Retrocopy | GFCYKMSYVYAHFPINMVTQKNQSLVGIRNFLGEKYTCRIWMRPSIACSVSQAQKDELIL<KGNDIEFVS |
Parental | NSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQADE |
NSAALIQQ..T.K.KDI.KFLDG.YV.EKGTVQ.ADE | |
Retrocopy | NSAALIQQVMTFKRKDI*KFLDGMYVPEKGTVQEADE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |